Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g089500.2.1 | |
| Solyc05g024010.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g111470.1.1 | Tomato | nucleus | 77.43 | 81.69 |
| Solyc11g016920.1.1 | Tomato | cytosol | 21.88 | 45.65 |
| Solyc02g021330.1.1 | Tomato | cytosol | 23.61 | 44.44 |
| Solyc03g110840.1.1 | Tomato | nucleus | 24.65 | 43.83 |
| Solyc03g110850.1.1 | Tomato | cytosol | 24.65 | 43.56 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 17.36 | 40.32 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.25 | 39.13 |
| Solyc11g016910.1.1 | Tomato | nucleus | 12.5 | 38.71 |
| Solyc06g072040.1.1 | Tomato | nucleus | 30.9 | 38.36 |
| AT5G50480.1 | Thale cress | nucleus | 24.31 | 34.65 |
| AT5G50490.1 | Thale cress | cytosol | 22.22 | 34.41 |
| AT5G27910.1 | Thale cress | nucleus | 21.88 | 33.69 |
| Solyc01g079870.2.1 | Tomato | nucleus | 28.82 | 32.17 |
| AT5G50470.1 | Thale cress | nucleus | 19.1 | 25.94 |
| Solyc03g111450.1.1 | Tomato | nucleus | 28.12 | 25.47 |
| Solyc02g091030.2.1 | Tomato | nucleus | 21.88 | 9.31 |
Protein Annotations
| EnsemblPlants:Solyc03g111460.1.1 | EnsemblPlantsGene:Solyc03g111460.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | ncoils:Coil | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002768F05 | UniProt:K4BK09 | MapMan:15.5.51.3 | : |
Description
No Description!
Coordinates
chr3:-:62058571..62062197
Molecular Weight (calculated)
31873.0 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.161
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHSDPVAA NAEVAAAVNA EEEVAEATAQ PIVNANDYLL QQQLRLFWAA QLQEIIQIRD FRGHSLPISR IKKIMKSDKE VRMISAESPI LLAKACELFI
101: QELTHRSWLK AQECQRQTLK KIDLFTVLKE TELFDFLVDV ISMDEPEEEA PTYVPGMLGN IPNRISYYYS PMGPPAPPMA PLAPSVRPPA PSMGPPAPSM
201: PTSPRGIMGR RAMPWVAPSM HVPPPLYPRK FGWYAAGGNP YLKVMPLLIQ MLSGTGTTEA LSGMMEPPRL IGYRMISKPS GAIWRSGH
101: QELTHRSWLK AQECQRQTLK KIDLFTVLKE TELFDFLVDV ISMDEPEEEA PTYVPGMLGN IPNRISYYYS PMGPPAPPMA PLAPSVRPPA PSMGPPAPSM
201: PTSPRGIMGR RAMPWVAPSM HVPPPLYPRK FGWYAAGGNP YLKVMPLLIQ MLSGTGTTEA LSGMMEPPRL IGYRMISKPS GAIWRSGH
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.