Factsheet for Solyc03g110840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090065	Potato	nucleus	79.63	87.16
Solyc11g016920.1.1	Tomato	cytosol	50.0	58.7
Solyc02g021330.1.1	Tomato	cytosol	53.7	56.86
Solyc03g110850.1.1	Tomato	cytosol	56.79	56.44
Solyc11g016910.1.1	Tomato	nucleus	30.25	52.69
Solyc08g007960.1.1	Tomato	mitochondrion	28.4	37.1
Solyc06g072040.1.1	Tomato	nucleus	41.98	29.31
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.74	28.7
Solyc03g111460.1.1	Tomato	cytosol	43.83	24.65
Solyc01g079870.2.1	Tomato	nucleus	38.27	24.03
Solyc03g111470.1.1	Tomato	nucleus	38.27	22.71
KRH70416	Soybean	cytosol	19.14	21.38
OQU83181	Sorghum	nucleus	20.37	19.3
Solyc03g111450.1.1	Tomato	nucleus	32.72	16.67
TraesCS7A01G336700.1	Wheat	cytosol	31.48	12.32
HORVU7Hr1G082930.1	Barley	nucleus	30.86	12.29
Os10t0191900-00	Rice	nucleus	25.31	12.24
Os05t0304800-01	Rice	nucleus	24.07	11.93
TraesCS7B01G248300.1	Wheat	cytosol	29.63	11.65
TraesCS7D01G344400.1	Wheat	cytosol	29.01	11.44
EES15819	Sorghum	nucleus	26.54	10.62
Os01t0102400-01	Rice	nucleus	26.54	10.21
Os01t0580400-01	Rice	nucleus	26.54	9.73
EES14613	Sorghum	nucleus	22.84	8.03
EES16679	Sorghum	nucleus	22.84	7.97
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	21.6	7.97
Solyc02g091030.2.1	Tomato	nucleus	27.16	6.5

Protein Annotations

EnsemblPlants:Solyc03g110840.1.1	EnsemblPlantsGene:Solyc03g110840.1	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:CBFA_NFYB_domain
InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF39	PFAM:PF00808	SUPFAM:SSF47113
UniParc:UPI0002768B29	UniProt:K4BJU7	MapMan:15.5.51.3	:	:	:

Description

Nuclear transcription factor Y subunit C [Source:UniProtKB/TrEMBL;Acc:K4BJU7]

Coordinates

chr3:+:61583623..61584111

Molecular Weight (calculated)

18374.8 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.587

Length

162 amino acids

Sequence
(BLAST)

001: MSELSNVEKT TMKNNSEKSI VNAAQSTGYP TLEMFWKSQQ SQMENIKDFK DRLLLPPTRI KKIMKKNEDV RMVAGESPVL LAKACELFIQ DLTLRSSIHA
101: QENHRRILKK DDLTDVIVQT DYFDFLLDVV HRNGATDPFT PNSVPLYAAG GSNEEDGNNL DQ

Best Arabidopsis Sequence Match ( AT5G63470.1 )
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Arabidopsis Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.