CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g016920.1.1	Tomato	cytosol	22.76	23.91
Solyc02g021330.1.1	Tomato	cytosol	22.76	21.57
PGSC0003DMT400039471	Potato	nucleus	22.76	21.43
KRH27143	Soybean	mitochondrion	17.93	21.14
KRH22187	Soybean	mitochondrion	17.93	21.14
Solyc03g110850.1.1	Tomato	cytosol	23.45	20.86
PGSC0003DMT400090065	Potato	nucleus	20.69	20.27
Solyc03g110840.1.1	Tomato	nucleus	21.38	19.14
KRH20896	Soybean	nucleus	23.45	17.71
KRH43409	Soybean	nucleus	24.14	17.07
KRH54177	Soybean	nucleus	26.21	16.59
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	26.9	16.46
KRH63772	Soybean	nucleus	25.52	16.44
KRH43702	Soybean	nucleus	28.28	15.13
KRG96853	Soybean	nucleus	26.9	15.12
KRH13746	Soybean	nucleus	27.59	14.93
KRG92828	Soybean	nucleus	26.9	14.83
KRH20891	Soybean	nucleus	24.83	14.81
KRH33966	Soybean	nucleus	26.9	14.77
OQU83181	Sorghum	nucleus	17.24	14.62
Solyc11g016910.1.1	Tomato	nucleus	8.97	13.98
KRH20893	Soybean	nucleus	20.69	11.24
Os10t0191900-00	Rice	nucleus	22.07	9.55
Os05t0304800-01	Rice	nucleus	20.69	9.17
Os01t0102400-01	Rice	nucleus	24.14	8.31
Os01t0580400-01	Rice	nucleus	24.83	8.14
EES15819	Sorghum	nucleus	21.38	7.65
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	22.76	7.52
HORVU7Hr1G082930.1	Barley	nucleus	19.31	6.88
TraesCS7B01G248300.1	Wheat	cytosol	19.31	6.8
EES16679	Sorghum	nucleus	21.38	6.68
TraesCS7D01G344400.1	Wheat	cytosol	18.62	6.57
TraesCS7A01G336700.1	Wheat	cytosol	18.62	6.52
EES14613	Sorghum	nucleus	19.31	6.07

Protein Annotations

Gene3D:1.10.20.10	MapMan:35.2	UniProt:A0A0R0KUF3	EMBL:ACUP02000771	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_02G089600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KRH70416	ProteinID:KRH70416	ProteinID:KRH70416.1	PFAM:PF00808
PANTHER:PTHR10252	PANTHER:PTHR10252:SF39	SUPFAM:SSF47113	UniParc:UPI0006ED8B92	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:7867876..7869120

Molecular Weight (calculated)

16342.8 Da

IEP (calculated)

4.196

GRAVY (calculated)

-0.197

Length

145 amino acids

Sequence
(BLAST)

001: MFTKQMISSE IPMLMSKACE IFIQELTFRA WMHAEKNNKS IVQPCDVAKV IMQTDTMNFL TEIIPNNLGD FSVFDAKEEN IANIAEENEV SLSFTAGFMG
101: NPMMKMDSEE NAGNIVEGNQ ATLPYTSGFM GNPMNMMNMD NVRMK

Best Arabidopsis Sequence Match ( AT1G54830.1 )
(BLAST)

001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN

Arabidopsis Description

NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.