CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16679	Sorghum	nucleus	77.22	76.72
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	67.46	70.84
EES15819	Sorghum	nucleus	47.07	53.58
OQU83181	Sorghum	nucleus	14.32	38.6
Os01t0102400-01	Rice	nucleus	27.77	30.4
Os01t0580400-01	Rice	nucleus	29.07	30.32
Solyc11g016920.1.1	Tomato	cytosol	7.38	24.64
PGSC0003DMT400090065	Potato	nucleus	7.81	24.32
Solyc03g110850.1.1	Tomato	cytosol	8.46	23.93
EES15444	Sorghum	nucleus	10.2	23.38
PGSC0003DMT400039471	Potato	nucleus	7.81	23.38
Solyc03g110840.1.1	Tomato	nucleus	8.03	22.84
EER96945	Sorghum	nucleus	9.98	22.77
EES13127	Sorghum	mitochondrion	6.07	21.88
Solyc02g021330.1.1	Tomato	cytosol	7.16	21.57
Solyc11g016910.1.1	Tomato	nucleus	4.12	20.43
KXG24590	Sorghum	nucleus	11.06	20.16
KXG24666	Sorghum	nucleus	9.54	19.64
KXG39763	Sorghum	nucleus	10.41	19.43
KRH70416	Soybean	cytosol	6.07	19.31
EER88787	Sorghum	nucleus	10.63	19.22

Protein Annotations

Gene3D:1.10.20.10	MapMan:35.1	EntrezGene:8069654	UniProt:C5YHH0	EnsemblPlants:EES14613	ProteinID:EES14613
ProteinID:EES14613.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A/H2B/H3	InterPro:IPR009072	PFAM:PF00125	PANTHER:PTHR10252	PANTHER:PTHR10252:SF43	EnsemblPlantsGene:SORBI_3007G054700
SUPFAM:SSF47113	UniParc:UPI0001A87C66	RefSeq:XP_002445118.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:5540371..5542244

Molecular Weight (calculated)

51821.5 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.344

Length

461 amino acids

Sequence
(BLAST)

001: MDCPINIRTS PRTPLSLSRQ QMIEEFWMKK QEEIEATKDF RERTIPVTYL KKVICAEKGK MMMTSDTPTF LTKACEVFVQ ELSVHAWVCA SSHNRSTILD
101: SDIAEAIASI ESYDFLNDVL RAHLEKYKFD PCLQSTKKPH HMLTSQSSTS LESSLDQYQM TQFIPQYTRY NPFLCTPQPL PPTNANPMHL PLPLPPQRAF
201: SIMATPITPT PIVSGSFPPI TYMTKDLWFL RKCISNNDAA LGLITPHQLL PKALPNIPNN CYVTTIASTD TYCVGSASTN NFVSQDGDMT FHFPHVPLKP
301: FQLSSSSTMD SIGSPIYTDI TELNHTKLDV THTGNSTHDI NPKATFNVDD GEQKHMGVET TAANHMNVVH EELDSKVVIT TNVGANDNNI NWDEIDMASD
401: SMLMEFWKDV MMEEEEELTP LPATNDLILH PSDMVELEGC CHGSYLLDDI MFDASTDGRH N

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.