CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024230_P001	Maize	nucleus, plastid	84.98	85.66
TraesCS6D01G147300.1	Wheat	nucleus	84.98	83.98
TraesCS6A01G157900.1	Wheat	nucleus	84.58	83.59
HORVU6Hr1G032200.1	Barley	nucleus	84.98	82.69
Os02t0170500-01	Rice	nucleus	84.58	82.63
EER88787	Sorghum	nucleus	74.7	74.12
TraesCS6B01G185700.1	Wheat	cytosol	84.98	73.88
Bra003334.1-P	Field mustard	nucleus	47.83	65.76
AT1G56170.2	Thale cress	nucleus	50.99	64.82
CDX67737	Canola	nucleus	46.64	62.77
KRH13746	Soybean	nucleus	61.26	57.84
VIT_19s0085g00520.t01	Wine grape	cytosol	61.26	57.62
EER96945	Sorghum	nucleus	45.85	57.43
KRH43702	Soybean	nucleus	61.26	57.2
GSMUA_Achr11P...	Banana	cytosol	57.31	57.09
EES15444	Sorghum	nucleus	44.27	55.72
GSMUA_Achr5P26790_001	Banana	cytosol	44.27	50.0
KXG39763	Sorghum	nucleus	45.85	46.96
GSMUA_Achr11P...	Banana	cytosol	54.15	44.63
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.66	43.8
EES13127	Sorghum	mitochondrion	20.95	41.41
KXG24666	Sorghum	nucleus	35.18	39.73
OQU83181	Sorghum	nucleus	17.0	25.15
EES15819	Sorghum	nucleus	20.55	12.84
EES14613	Sorghum	nucleus	20.16	11.06
EES16679	Sorghum	nucleus	18.58	10.13

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:8071112	UniProt:C5YHY9	InterPro:CBFA_NFYB_domain	ProteinID:EES13455.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG24590	ProteinID:KXG24590
ProteinID:KXG24590.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	EnsemblPlantsGene:SORBI_3007G063200	SUPFAM:SSF47113
UniParc:UPI0001A875C5	RefSeq:XP_002443960.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:6645536..6648860

Molecular Weight (calculated)

28381.7 Da

IEP (calculated)

4.806

GRAVY (calculated)

-0.622

Length

253 amino acids

Sequence
(BLAST)

001: MEPSSQPQPV MGVGSQPYPA AASYAAPTMV AGAPAVPPGS QPAAQFPNPA QLSAQHQMVY QQAQQFHHQL QQQQQQQLRE FWTTQMDEIE QTTDFKNHTL
101: PLARIKKIMK ADEDVRMISA EAPVVFAKAC EVFILELTLR SWMHTEENKR RTLQKNDIAA AITRTDIYDF LVDIIPRDEM KEEGLGLPRV GLPPAMGAPA
201: DHSSYPYYYV PAQQVPGAGM MYGGQQGQPM TYMWQKPQVP EEEPSEEQQQ QSP

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.