Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 19.87 | 58.1 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 25.73 | 58.09 |
| GSMUA_Achr11P... | Banana | cytosol | 47.56 | 57.48 |
| Os02t0170500-01 | Rice | nucleus | 47.23 | 55.98 |
| KXG24590 | Sorghum | nucleus | 44.63 | 54.15 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 43.65 | 53.6 |
| EER88787 | Sorghum | nucleus | 43.97 | 52.94 |
| Zm00001d036648_P001 | Maize | extracellular | 42.02 | 52.65 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 43.65 | 52.34 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 43.65 | 52.34 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 44.3 | 52.31 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 38.11 | 52.23 |
| Zm00001d046967_P001 | Maize | nucleus | 42.02 | 52.02 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 42.35 | 51.79 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 26.38 | 50.94 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 23.78 | 50.0 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 41.04 | 49.03 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 40.07 | 48.05 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 39.74 | 47.47 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 43.97 | 46.39 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 38.76 | 46.12 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 28.34 | 45.79 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 38.44 | 45.38 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 18.57 | 45.24 |
| GSMUA_Achr10P... | Banana | nucleus | 28.34 | 44.85 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 31.6 | 41.63 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 30.62 | 41.23 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 31.27 | 41.03 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 26.06 | 41.03 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 26.06 | 40.61 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 31.92 | 39.52 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 29.97 | 39.48 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 33.55 | 39.31 |
| KXG24666 | Sorghum | nucleus | 28.01 | 38.39 |
| Os08t0206500-00 | Rice | nucleus | 29.64 | 32.27 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 36.16 | 16.28 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P18170_001 | EnsemblPlants:GSMUA_Achr11T18170_001 | EnsemblPlantsGene:GSMUA_Achr11G18170_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000296958D | UniProt:M0RT97 | MapMan:15.5.51.3 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G18170_001]
Coordinates
chr11:-:19613416..19618718
Molecular Weight (calculated)
34408.0 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.250
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDSPRDQF VPTPTRTRYS RWNTYIRLLV LSRCFAFLRV PDEEKDTAFV GIVASPPSPL DACSWLAQNC KETGRSVLVM DQSTQPLQPV MGIVTGAAQI
101: AYVAPAYQPA SIVTGAPAAA GTLPTPPTSA FTTNQTQLAS QHQVAYQQVQ QFHHQQQQHQ QQQLQAFWDN QTLEIEQTSD FRNHSLPLAR IKKIMKADED
201: VRMISSEAPV VFAKACELFI LELTLRAWIH TEENKRRTLQ KNDIAAAVTR TDIFDFLVDI VPRDELKDDG LGILRAALPT VATRSPTTFT DLILIIGHSK
301: NTYIWTS
101: AYVAPAYQPA SIVTGAPAAA GTLPTPPTSA FTTNQTQLAS QHQVAYQQVQ QFHHQQQQHQ QQQLQAFWDN QTLEIEQTSD FRNHSLPLAR IKKIMKADED
201: VRMISSEAPV VFAKACELFI LELTLRAWIH TEENKRRTLQ KNDIAAAVTR TDIFDFLVDI VPRDELKDDG LGILRAALPT VATRSPTTFT DLILIIGHSK
301: NTYIWTS
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.