Factsheet for Zm00001d024230_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24590	Sorghum	nucleus	85.66	84.98
TraesCS6D01G147300.1	Wheat	nucleus	82.07	80.47
TraesCS6A01G157900.1	Wheat	nucleus	81.67	80.08
HORVU6Hr1G032200.1	Barley	nucleus	81.67	78.85
Os02t0170500-01	Rice	nucleus	80.88	78.38
Zm00001d046967_P001	Maize	nucleus	71.31	72.18
TraesCS6B01G185700.1	Wheat	cytosol	82.07	70.79
Zm00001d036648_P001	Maize	extracellular	68.13	69.8
Bra003334.1-P	Field mustard	nucleus	46.22	63.04
AT1G56170.2	Thale cress	nucleus	48.61	61.31
CDX67737	Canola	nucleus	45.42	60.64
Zm00001d020874_P001	Maize	extracellular	44.22	55.5
VIT_19s0085g00520.t01	Wine grape	cytosol	58.57	54.65
KRH13746	Soybean	nucleus	58.17	54.48
GSMUA_Achr11P...	Banana	cytosol	54.98	54.33
KRH43702	Soybean	nucleus	57.77	53.51
Zm00001d031310_P001	Maize	nucleus	41.43	52.0
Zm00001d052838_P001	Maize	nucleus	40.24	50.0
GSMUA_Achr5P26790_001	Banana	cytosol	41.83	46.88
Zm00001d028432_P001	Maize	nucleus	45.02	46.12
Zm00001d026648_P001	Maize	mitochondrion	21.51	42.52
GSMUA_Achr11P...	Banana	cytosol	51.79	42.35
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	41.04	39.92
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.65	32.97
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	16.73	9.57

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100273685	MapMan:15.5.51.3	ProteinID:AQK40887.1	UniProt:B4FWZ1	EMBL:BT041629
InterPro:CBFA_NFYB_domain	ncoils:Coil	EMBL:EU970712	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	SUPFAM:SSF47113	UniParc:UPI00017B745E
EnsemblPlantsGene:Zm00001d024230	EnsemblPlants:Zm00001d024230_P001	EnsemblPlants:Zm00001d024230_T001	SEG:seg	:	:

Description

CCAAT-HAP5-transcription factor 55Nuclear transcription factor Y subunit C-2

Coordinates

chr10:+:58448599..58449354

Molecular Weight (calculated)

28030.3 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.575

Length

251 amino acids

Sequence
(BLAST)

001: MEPSSQPQPM MGVGSQPYPA AAPYVPVPGS LAVPPGSQPA AAFPNPTQLS AQHQMVYQQA QQFHQQLQQQ QEQQLREFWT TQMDEIKQAN DFKIHTLPLA
101: RIKKIMKADE DVRMISAEAP VVFAKACEVF ILELTLRSWM HTEENKRRTL QKNDIAAAIT RTDIYDFLVD IIPRDEMKEE GLGHNPIVGL PPAMGAPADH
201: GSHPYYYVPA QQVQGAGMMY GGQQGHPVTY MWQTPQGQAA EPPEEEQQQS A

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.