Factsheet for Zm00001d046967_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036648_P001	Maize	extracellular	91.94	93.06
EER88787	Sorghum	nucleus	92.34	89.8
Os06t0667100-01	Rice	cytosol, nucleus, plastid	79.44	78.8
TraesCS7D01G463100.1	Wheat	nucleus	74.6	71.98
Zm00001d024230_P001	Maize	nucleus, plastid	72.18	71.31
TraesCS7A01G475400.1	Wheat	nucleus	72.98	70.43
HORVU7Hr1G108370.1	Barley	nucleus	73.39	70.0
TraesCS7B01G377500.1	Wheat	nucleus	71.77	69.53
Bra003334.1-P	Field mustard	nucleus	46.37	62.5
AT1G56170.2	Thale cress	nucleus	50.0	62.31
CDX67737	Canola	nucleus	45.56	60.11
Zm00001d020874_P001	Maize	extracellular	47.18	58.5
KRH13746	Soybean	nucleus	60.08	55.6
KRH43702	Soybean	nucleus	60.48	55.35
VIT_19s0085g00520.t01	Wine grape	cytosol	59.68	55.02
Zm00001d031310_P001	Maize	nucleus	44.35	55.0
GSMUA_Achr11P...	Banana	cytosol	56.05	54.72
TraesCS7D01G462100.1	Wheat	nucleus	41.53	52.28
TraesCS7B01G377200.1	Wheat	nucleus	52.02	52.02
TraesCS7D01G462200.1	Wheat	nucleus	54.84	51.91
TraesCS7B01G376500.1	Wheat	nucleus	47.58	51.75
TraesCS3D01G102500.1	Wheat	nucleus	48.39	51.5
Zm00001d052838_P001	Maize	nucleus	41.94	51.49
TraesCS7A01G474800.1	Wheat	nucleus	47.98	50.85
TraesCS7B01G377000.1	Wheat	nucleus	46.77	49.79
GSMUA_Achr5P26790_001	Banana	cytosol	41.94	46.43
Zm00001d028432_P001	Maize	nucleus	44.35	44.9
Zm00001d026648_P001	Maize	mitochondrion	22.18	43.31
GSMUA_Achr11P...	Banana	cytosol	52.02	42.02
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.74	41.09
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	41.53	36.92
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	17.74	10.02

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100217109	MapMan:15.5.51.3	ProteinID:AQL05268.1	UniProt:B4FLF9	EMBL:BT037947
InterPro:CBFA_NFYB_domain	EMBL:EU961426	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	SUPFAM:SSF47113	UniParc:UPI000152A2E2	EnsemblPlantsGene:Zm00001d046967
EnsemblPlants:Zm00001d046967_P001	EnsemblPlants:Zm00001d046967_T001	SEG:seg	:	:	:

Description

CCAAT-HAP5-transcription factor 57Nuclear transcription factor Y subunit C-2

Coordinates

chr9:+:113422355..113423101

Molecular Weight (calculated)

27690.8 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.541

Length

248 amino acids

Sequence
(BLAST)

001: MEPSPQPMGV AAGGSQVYPA SAYPPAATVA PASVVSAGLQ SGQPFPANPG HMSAQHQIVY QQAQQFHQQL QQQQQQQLQQ FWVERMTEIE ATTDFKNHNL
101: PLARIKKIMK ADEDVRMISA EAPVVFAKAC EIFILELTLR SWMHTEENKR RTLQKNDIAA AITRTDIYDF LVDIVPRDEM KEDGIGLPRA GLPPMGAPAD
201: AYPYYYMPQQ QVPGSGMVYG AQQGHPVTYL WQEPQQQQEQ APEEQQSA

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.