Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d031662_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G48590.1 | Zm00001d031662_P001 | AT1G28050.1 | 17138697 |
| AT5G63470.1 | Zm00001d031662_P001 | AT1G28050.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39763 | Sorghum | nucleus | 95.92 | 95.14 |
| Os03t0251350-00 | Rice | nucleus | 90.2 | 89.84 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 85.71 | 87.14 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 85.71 | 86.78 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 85.71 | 86.78 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 85.31 | 86.72 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 49.39 | 63.68 |
| GSMUA_Achr10P... | Banana | nucleus | 49.8 | 62.89 |
| CDY05857 | Canola | nucleus | 53.47 | 59.28 |
| Bra018046.1-P | Field mustard | nucleus | 53.06 | 58.82 |
| CDY08084 | Canola | nucleus | 53.06 | 58.82 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.29 | 57.83 |
| KRH63772 | Soybean | nucleus | 53.06 | 57.78 |
| Solyc06g072040.1.1 | Tomato | nucleus | 54.69 | 57.76 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.88 | 57.39 |
| AT3G48590.1 | Thale cress | nucleus | 54.69 | 57.27 |
| KRH54177 | Soybean | nucleus | 53.47 | 57.21 |
| AT5G63470.1 | Thale cress | plastid | 54.69 | 53.6 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 54.29 | 52.36 |
| Zm00001d020874_P001 | Maize | extracellular | 42.04 | 51.5 |
| Zm00001d031310_P001 | Maize | nucleus | 40.82 | 50.0 |
| Zm00001d052838_P001 | Maize | nucleus | 40.41 | 49.01 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 54.29 | 48.9 |
| CDX84419 | Canola | plastid | 53.88 | 46.64 |
| CDY66668 | Canola | plastid | 50.61 | 45.42 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 46.12 | 45.02 |
| Zm00001d036648_P001 | Maize | extracellular | 44.9 | 44.9 |
| Zm00001d046967_P001 | Maize | nucleus | 44.9 | 44.35 |
| CDY48146 | Canola | plastid | 47.35 | 43.94 |
| Zm00001d026648_P001 | Maize | mitochondrion | 22.45 | 43.31 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 36.33 | 31.9 |
| Zm00001d023466_P001 | Maize | cytosol, mitochondrion, nucleus | 18.37 | 10.25 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100281601 | MapMan:15.5.51.3 | UniProt:B6SWV5 | InterPro:CBFA_NFYB_domain | EMBL:EU957220 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0046982 | GO:GO:0048579 | InterPro:Histone-fold | InterPro:IPR009072 | ProteinID:ONL96011.1 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF67 | SUPFAM:SSF47113 | UniParc:UPI000152A2E0 | EnsemblPlantsGene:Zm00001d028432 |
| EnsemblPlants:Zm00001d028432_P001 | EnsemblPlants:Zm00001d028432_T001 | SEG:seg | : | : | : |
Description
CCAAT-HAP5-transcription factor 511Nuclear transcription factor Y subunit C-1
Coordinates
chr1:-:34899450..34900187
Molecular Weight (calculated)
25990.7 Da
IEP (calculated)
5.056
GRAVY (calculated)
-0.330
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQPLPYST GQPPAPGGAP VAGMPGAAGL PPVPHHHLLQ QQQAQLQAFW AYQRQEAERA SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC
101: ELFILELTIR SWLHAEENKR RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAPGTGVVGA GAPGGAPAAG MPYYYPPMGQ PAPMMPAWHV
201: PAWDPAWQQG AADVDQSGSF SEEGQGFGAG HGGAASFPPA PPTSE
101: ELFILELTIR SWLHAEENKR RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAPGTGVVGA GAPGGAPAAG MPYYYPPMGQ PAPMMPAWHV
201: PAWDPAWQQG AADVDQSGSF SEEGQGFGAG HGGAASFPPA PPTSE
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.