Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G263500.1 | |
| TraesCS7B01G161500.1 | |
| TraesCS7D01G264300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G062890.2 | Barley | nucleus | 98.76 | 98.76 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 98.34 | 97.93 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 98.34 | 97.93 |
| Os03t0251350-00 | Rice | nucleus | 90.46 | 88.62 |
| KXG39763 | Sorghum | nucleus | 87.55 | 85.43 |
| Zm00001d028432_P001 | Maize | nucleus | 86.72 | 85.31 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 51.45 | 65.26 |
| GSMUA_Achr10P... | Banana | nucleus | 51.45 | 63.92 |
| CDY05857 | Canola | nucleus | 54.77 | 59.73 |
| CDY08084 | Canola | nucleus | 54.36 | 59.28 |
| Bra018046.1-P | Field mustard | nucleus | 54.36 | 59.28 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 56.02 | 58.7 |
| Solyc06g072040.1.1 | Tomato | nucleus | 56.43 | 58.62 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.6 | 58.26 |
| AT3G48590.1 | Thale cress | nucleus | 56.02 | 57.69 |
| KRH63772 | Soybean | nucleus | 53.53 | 57.33 |
| KRH54177 | Soybean | nucleus | 54.36 | 57.21 |
| AT5G63470.1 | Thale cress | plastid | 57.68 | 55.6 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 56.43 | 53.54 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 43.98 | 53.27 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 43.98 | 52.22 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 56.02 | 49.63 |
| CDX84419 | Canola | plastid | 55.6 | 47.35 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 49.38 | 46.48 |
| CDY66668 | Canola | plastid | 52.28 | 46.15 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 48.13 | 45.14 |
| CDY48146 | Canola | plastid | 48.96 | 44.7 |
| TraesCS1A01G354900.1 | Wheat | mitochondrion | 22.41 | 40.0 |
| TraesCS1A01G355900.1 | Wheat | mitochondrion | 22.82 | 39.01 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 37.76 | 38.89 |
| TraesCS7A01G336700.1 | Wheat | cytosol | 20.33 | 11.84 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G081000.1 | EnsemblPlantsGene:TraesCS4A01G081000 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF67 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr4A:-:83571421..83572146
Molecular Weight (calculated)
25556.1 Da
IEP (calculated)
5.538
GRAVY (calculated)
-0.374
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHQLPYTT QPPATGASGA PLPGVPGPPP VPHHHLLQQQ QAQLQAFWAY QRQEAERASA SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL
101: FILELTIRSW LHAEENKRRT LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFA AGGVGAAGGG PAAGLPYYYP PMGQPAAPMM PAWHVPAWEP
201: AWQQGGAGVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS E
101: FILELTIRSW LHAEENKRRT LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFA AGGVGAAGGG PAAGLPYYYP PMGQPAAPMM PAWHVPAWEP
201: AWQQGGAGVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS E
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.