Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16620_001 | Banana | cytosol | 84.02 | 85.79 |
| Bra018046.1-P | Field mustard | nucleus | 68.56 | 60.18 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 69.59 | 58.7 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 68.56 | 57.83 |
| KRH63772 | Soybean | nucleus | 67.01 | 57.78 |
| Solyc06g072040.1.1 | Tomato | nucleus | 68.56 | 57.33 |
| AT3G48590.1 | Thale cress | nucleus | 68.56 | 56.84 |
| KRH54177 | Soybean | nucleus | 67.01 | 56.77 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 73.71 | 56.3 |
| AT5G63470.1 | Thale cress | plastid | 70.1 | 54.4 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 64.95 | 52.28 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 64.43 | 51.65 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 63.92 | 51.45 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 63.92 | 51.24 |
| Os03t0251350-00 | Rice | nucleus | 63.92 | 50.41 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 70.1 | 50.0 |
| Zm00001d028432_P001 | Maize | nucleus | 62.89 | 49.8 |
| KXG39763 | Sorghum | nucleus | 62.89 | 49.39 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 25.77 | 47.62 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 31.96 | 45.59 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 29.38 | 45.24 |
| CDY48146 | Canola | plastid | 61.34 | 45.08 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 32.47 | 43.15 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 31.96 | 38.99 |
| GSMUA_Achr11P... | Banana | cytosol | 46.91 | 35.83 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 39.18 | 33.93 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 32.99 | 32.82 |
| GSMUA_Achr11P... | Banana | cytosol | 44.85 | 28.34 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 36.08 | 27.13 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 51.03 | 14.52 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P11750_001 | EnsemblPlants:GSMUA_Achr10T11750_001 | EnsemblPlantsGene:GSMUA_Achr10G11750_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | PFAM:PF00808 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI0002954DCC | UniProt:M0RHF1 | MapMan:15.5.51.3 | : |
Description
Nuclear transcription factor Y subunit C-4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G11750_001]
Coordinates
chr10:+:21086975..21088126
Molecular Weight (calculated)
21143.2 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.297
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWNYQRQEI EHATDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI RSWLHAEENK RRTLQKNDIA AAISRTDIFD FLVDIVPREE
101: IKEEALGLVG GSGEGGATAG VPYYYPPVGQ PGPGVIMGQP AVAGIDPAIY VQQPAQAWQP LWHQGLPEDG NGHGLDGSGY AAAPPPPPPA PPSS
101: IKEEALGLVG GSGEGGATAG VPYYYPPVGQ PGPGVIMGQP AVAGIDPAIY VQQPAQAWQP LWHQGLPEDG NGHGLDGSGY AAAPPPPPPA PPSS
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.