Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 29.37 | 35.24 |
| GSMUA_Achr10P... | Banana | nucleus | 45.24 | 29.38 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 43.65 | 28.95 |
| VIT_14s0006g02320.t01 | Wine grape | cytosol | 23.81 | 23.26 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 23.81 | 22.06 |
| GSMUA_Achr11P... | Banana | cytosol | 44.44 | 22.05 |
| AT5G38140.1 | Thale cress | nucleus | 33.33 | 21.54 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 23.81 | 20.55 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 24.6 | 19.5 |
| GSMUA_Achr11P... | Banana | cytosol | 45.24 | 18.57 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 27.78 | 15.62 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 23.81 | 15.38 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 28.57 | 13.95 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 42.86 | 7.92 |
| Solyc02g091030.2.1 | Tomato | nucleus | 30.95 | 5.76 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016602 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr10G20180_001 | EnsemblPlants:GSMUA_Achr10P20180_001 |
| EnsemblPlants:GSMUA_Achr10T20180_001 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0RJU3 | InterPro:NFYC/HAP5_su | PFAM:PF00808 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF8 | SUPFAM:SSF47113 | UniParc:UPI0002959CC2 | SEG:seg | : |
Description
Nuclear transcription factor Y subunit C-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G20180_001]
Coordinates
chr10:-:26271847..26272401
Molecular Weight (calculated)
14695.2 Da
IEP (calculated)
8.349
GRAVY (calculated)
0.065
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MELQKWHLQQ FWQQQMLELG NLADYKQHQL PLARIKRIMK LDGAAKMVSS DTPIIFAKAC ELFILELTVR SWLHAEQCKR LTIRRTDVAG AICHADMLNF
101: LVDMLRPDEF QVLRCFSSNL AVLFGF
101: LVDMLRPDEF QVLRCFSSNL AVLFGF
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.