Factsheet for GSMUA_Achr9P11550_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	19.06	54.85
GSMUA_Achr4P03920_001	Banana	nucleus	10.7	53.68
PGSC0003DMT400023211	Potato	nucleus	19.94	53.12
KRG96853	Soybean	nucleus	20.09	53.1
VIT_05s0020g02790.t01	Wine grape	nucleus	20.38	53.05
Solyc01g079870.2.1	Tomato	nucleus	19.94	52.71
GSMUA_Achr3P00060_001	Banana	mitochondrion, plastid	8.06	52.38
KRG92828	Soybean	nucleus	20.09	52.09
AT1G54830.3	Thale cress	nucleus	16.57	52.07
KRH33966	Soybean	nucleus	20.09	51.89
PGSC0003DMT400008660	Potato	nucleus	19.06	51.59
CDX93525	Canola	nucleus	16.57	51.36
GSMUA_Achr10P...	Banana	nucleus	14.52	51.03
Bra018589.1-P	Field mustard	nucleus	16.42	50.91
VIT_14s0128g00250.t01	Wine grape	nucleus	19.5	50.57
GSMUA_Achr6P16620_001	Banana	cytosol	13.93	50.0
Bra030749.1-P	Field mustard	nucleus	15.84	49.54
Bra031651.1-P	Field mustard	nucleus	16.42	49.12
CDY06341	Canola	nucleus	16.42	49.12
GSMUA_Achr4P13170_001	Banana	nucleus	10.41	48.63
AT1G08970.4	Thale cress	nucleus	16.42	48.48
CDY31119	Canola	nucleus	13.2	47.12
CDY22654	Canola	cytosol	17.3	46.46
GSMUA_Achr3P11990_001	Banana	nucleus	10.7	45.91
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	7.92	42.86
GSMUA_Achr11P...	Banana	cytosol	15.69	42.13
GSMUA_Achr5P26790_001	Banana	cytosol	13.64	41.52
KRH43409	Soybean	nucleus	11.73	39.02
GSMUA_Achr1P19420_001	Banana	nucleus	11.14	38.97
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	14.08	37.21
CDY32142	Canola	mitochondrion, nucleus	16.13	37.16
KRH20896	Soybean	nucleus	10.26	36.46
GSMUA_Achr11P...	Banana	cytosol	16.28	36.16
CDX95019	Canola	cytosol, mitochondrion, nucleus	17.01	35.47
KRH20891	Soybean	nucleus	12.02	33.74
KRH20893	Soybean	nucleus	11.73	29.96

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	Gene3D:3.40.50.10810	InterPro:CBFA_NFYB_domain	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr9G11550_001	EnsemblPlants:GSMUA_Achr9P11550_001	EnsemblPlants:GSMUA_Achr9T11550_001	InterPro:Helicase_ATP-bd
InterPro:Histone-fold	InterPro:IPR009072	InterPro:IPR014001	InterPro:IPR038718	UniProt:M0TZG4	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00808	PFscan:PS51192	PANTHER:PTHR10799	PANTHER:PTHR10799:SF848	SMART:SM00487
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF47113	SUPFAM:SSF52540	UniParc:UPI000295DA4B	SEG:seg

Description

Nuclear transcription factor Y subunit C-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11550_001]

Coordinates

chr9:+:7499397..7507316

Molecular Weight (calculated)

78109.6 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.283

Length

682 amino acids

Sequence
(BLAST)

001: MEVPGHGQPA GTGAVQLPYV SLPYQANQMM VTSLPPSAGQ MTNPASQVQL TQHHLAYQRA QQQQMNQLHQ TLQMFRTNQY QEIAATCDFK NHSLPLARIK
101: KIMKADEDVR MIAAEVPVLF ARACEMFILE LTYRSWAHAE ENKRRTLQKN DIAGAITRTD VFDFLVDIVP MEDVKEDVLA SISTDGTNES LPYYYVPSQA
201: GSLKMIMNNS EVDQRRRRRQ EETLDFLDAD DRVSTSDSEY VLDEEEDGFD ESDQDASALA LGMMLSLQGI DTAGGGHGRE EPVRPRNDSR RRDRSAALLL
301: WQIWERENEK WIDEFEQKGQ DKLGFEPIGL VETAEPSPDV ILPLLRFQKE WLAWALKQEN SDIKGGILAD EMGMGKTIQA ISLIKCTLVI CPVVAVIQWV
401: GEIDRYTEKG STRVLVYHGA KRDKINSNFD DYDFVITTYS TIECEFRKYM MPPKGFEKTK KQDELADKLM NPSPGKSILH SVKWERIILD EVSNYPLAPY
501: QRIRFRLQNT FSLLIGLEKL TDIARHMWYC GSSNMPRITG ICISCHYHVY YAGQNIAFDN LNLAVIVYNI TAQFLLLVAT WIDPYCNFYV LMQAHFIKDR
601: RSNTAKAVFA LKSFYKWALS GTPLQNRVGE LYSLVRFLQI WPYSFYLCKD CNCKVLDYGC LQFLEAYEAL IYLAVVSCFR SI

Best Arabidopsis Sequence Match ( AT1G54830.1 )
(BLAST)

001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN

Arabidopsis Description

NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.