CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33966	Soybean	nucleus	93.16	92.8
KRG96853	Soybean	nucleus	84.03	85.66
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	76.81	85.23
Os09t0480700-01	Rice	nucleus	37.64	58.93
GSMUA_Achr4P03920_001	Banana	nucleus	28.9	55.88
KRH13746	Soybean	nucleus	55.13	54.1
Zm00001d020874_P001	Maize	extracellular	41.06	54.0
KRH43702	Soybean	nucleus	55.13	53.51
EER96945	Sorghum	nucleus	40.68	52.97
TraesCS7B01G135000.1	Wheat	nucleus	39.92	52.76
TraesCS7A01G239500.1	Wheat	nucleus	39.92	52.76
TraesCS7D01G237100.1	Wheat	nucleus	39.92	52.76
KRH63772	Soybean	nucleus	44.87	52.44
KRH54177	Soybean	nucleus	45.63	52.4
TraesCS5B01G255900.1	Wheat	nucleus	40.3	52.22
TraesCS5A01G256500.1	Wheat	nucleus	40.3	52.22
TraesCS5D01G265000.1	Wheat	nucleus	39.92	51.72
Os08t0496500-01	Rice	nucleus	39.54	50.73
GSMUA_Achr4P13170_001	Banana	nucleus	28.14	50.68
GSMUA_Achr3P11990_001	Banana	nucleus	30.42	50.31
EES15444	Sorghum	nucleus	38.02	49.75
Zm00001d052838_P001	Maize	nucleus	38.02	49.51
Zm00001d031310_P001	Maize	nucleus	37.64	49.5
KRH22187	Soybean	mitochondrion	21.67	46.34
KRH27143	Soybean	mitochondrion	20.91	44.72
KRH43409	Soybean	nucleus	33.08	42.44
HORVU7Hr1G048760.3	Barley	plastid	39.54	40.0
GSMUA_Achr1P19420_001	Banana	nucleus	29.66	40.0
KRH20896	Soybean	nucleus	28.14	38.54
KRH20891	Soybean	nucleus	34.98	37.86
KRH20893	Soybean	nucleus	36.5	35.96
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.46	31.54
KRH70416	Soybean	cytosol	14.83	26.9
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	52.09	20.09

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100785287	MapMan:15.5.51.3	EMBL:ACUP02012768	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_20G232400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1NIX7	InterPro:IPR009072	EnsemblPlants:KRG92828
ProteinID:KRG92828	ProteinID:KRG92828.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113
UniParc:UPI000233DDAA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46585903..46586694

Molecular Weight (calculated)

29183.8 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.564

Length

263 amino acids

Sequence
(BLAST)

001: MDNQGHGHGQ NPSMGIVGNG PQLPYGSNPY QASHITGSPG MVVASPGTIQ STGQPAATQL GQHQLAYQQQ QQQLQQRLQA FWANQYQEIK KVTDFKNHSL
101: PLARIKKIMK ADEDVRMISA EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASMPR GTVPVTGPAE
201: ALPYCYIPPQ HAQQVGAAGV MMGNKPVMDP YAQQSHPYNM APQMWPQLLP PPPPEQQQSS PDQ

Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.