CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20891	Soybean	nucleus	61.42	67.49
KRH43409	Soybean	nucleus	45.69	59.51
Os09t0480700-01	Rice	nucleus	27.34	43.45
KRH20896	Soybean	nucleus	30.34	42.19
GSMUA_Achr4P03920_001	Banana	nucleus	21.35	41.91
KRH22187	Soybean	mitochondrion	18.73	40.65
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	35.58	40.08
Zm00001d020874_P001	Maize	extracellular	29.59	39.5
TraesCS7D01G237100.1	Wheat	nucleus	29.21	39.2
TraesCS7A01G239500.1	Wheat	nucleus	29.21	39.2
EER96945	Sorghum	nucleus	29.59	39.11
KRH27143	Soybean	mitochondrion	17.98	39.02
TraesCS5B01G255900.1	Wheat	nucleus	29.59	38.92
TraesCS5A01G256500.1	Wheat	nucleus	29.59	38.92
TraesCS5D01G265000.1	Wheat	nucleus	29.59	38.92
TraesCS7B01G135000.1	Wheat	nucleus	28.84	38.69
EES15444	Sorghum	nucleus	28.84	38.31
Zm00001d052838_P001	Maize	nucleus	28.84	38.12
Os08t0496500-01	Rice	nucleus	29.21	38.05
GSMUA_Achr4P13170_001	Banana	nucleus	20.6	37.67
KRG96853	Soybean	nucleus	36.33	37.6
Zm00001d031310_P001	Maize	nucleus	28.09	37.5
KRG92828	Soybean	nucleus	35.96	36.5
KRH13746	Soybean	nucleus	36.33	36.19
KRH43702	Soybean	nucleus	36.7	36.16
KRH33966	Soybean	nucleus	35.58	35.98
KRH54177	Soybean	nucleus	30.71	35.81
KRH63772	Soybean	nucleus	29.96	35.56
GSMUA_Achr3P11990_001	Banana	nucleus	20.97	35.22
HORVU7Hr1G048760.3	Barley	plastid	29.59	30.38
GSMUA_Achr1P19420_001	Banana	nucleus	20.97	28.72
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	24.34	23.3
KRH70416	Soybean	cytosol	11.24	20.69
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	29.96	11.73

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100807580	MapMan:15.5.51.3	EMBL:ACUP02008324	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_13G207600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K7M0W9	EnsemblPlants:KRH20893
ProteinID:KRH20893	ProteinID:KRH20893.1	ProteinID:KRH20894.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF39
SUPFAM:SSF47113	UniParc:UPI000294E419	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32108641..32109704

Molecular Weight (calculated)

29993.4 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.621

Length

267 amino acids

Sequence
(BLAST)

001: MQVHVYNNNA KMDQNQHVQP AQEAYGENQY QSNPVTTPTV LPTQTSDSSL SSSYPRQHPN DPQLEAMYEL RQERLQQQLN NFWAKQCQEI QEATDLRTHS
101: LPLARIKKIM KSDEDVKLVS AEAPVVFAKA CEMFIMELTL RAWANVEEDQ RKIIKKHDIA SSISRADVFD FLIDTVPRPL ENILDQQGFV GLPTSTVPTP
201: LNDACYHNPP PQALVPGNPY GSPRIAVGMP ILDQNHPGLQ IHHFLTPMEP TPTPTPNPQN PSPSSDC

Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.