CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20891	Soybean	nucleus	58.54	49.38
Os09t0480700-01	Rice	nucleus	37.56	45.83
KRH20893	Soybean	nucleus	59.51	45.69
KRH20896	Soybean	nucleus	42.44	45.31
GSMUA_Achr4P03920_001	Banana	nucleus	28.78	43.38
Zm00001d020874_P001	Maize	extracellular	40.0	41.0
TraesCS7D01G237100.1	Wheat	nucleus	39.51	40.7
TraesCS7A01G239500.1	Wheat	nucleus	39.51	40.7
EER96945	Sorghum	nucleus	40.0	40.59
TraesCS5B01G255900.1	Wheat	nucleus	40.0	40.39
TraesCS5A01G256500.1	Wheat	nucleus	40.0	40.39
TraesCS7B01G135000.1	Wheat	nucleus	39.02	40.2
Zm00001d052838_P001	Maize	nucleus	39.51	40.1
Os08t0496500-01	Rice	nucleus	40.0	40.0
TraesCS5D01G265000.1	Wheat	nucleus	39.51	39.9
KRH22187	Soybean	mitochondrion	23.9	39.84
EES15444	Sorghum	nucleus	39.02	39.8
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	45.37	39.24
GSMUA_Achr4P13170_001	Banana	nucleus	27.8	39.04
Zm00001d031310_P001	Maize	nucleus	38.05	39.0
KRH27143	Soybean	mitochondrion	22.93	38.21
KRH13746	Soybean	nucleus	47.8	36.57
KRH43702	Soybean	nucleus	48.29	36.53
GSMUA_Achr3P11990_001	Banana	nucleus	28.29	36.48
KRH54177	Soybean	nucleus	40.49	36.24
KRH63772	Soybean	nucleus	39.51	36.0
KRG96853	Soybean	nucleus	44.88	35.66
KRH33966	Soybean	nucleus	42.93	33.33
KRG92828	Soybean	nucleus	42.44	33.08
HORVU7Hr1G048760.3	Barley	plastid	39.51	31.15
GSMUA_Achr1P19420_001	Banana	nucleus	29.27	30.77
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.15	25.09
KRH70416	Soybean	cytosol	17.07	24.14
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	39.02	11.73

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EMBL:ACUP02004856	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_08G148200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	GO:GO:0046982	InterPro:Histone-fold
UniProt:I1KTG9	InterPro:IPR009072	EnsemblPlants:KRH43409	ProteinID:KRH43409	ProteinID:KRH43409.1	PFAM:PF00808
PANTHER:PTHR10252	PANTHER:PTHR10252:SF39	SUPFAM:SSF47113	UniParc:UPI0002338A01	:	:

Description

hypothetical protein

Coordinates

chr8:+:11300069..11300686

Molecular Weight (calculated)

23395.7 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.696

Length

205 amino acids

Sequence
(BLAST)

001: MDQNQHGQPT QEAVGKNQYQ SNPMMAPTNP PSETIGPYVT SSFPREKQHA PQDIYQEQLN NFWAKQCQEI EETTDLRTHS LPYARIKKIM KADRDVRMVS
101: AEAPVLFAKA CEMFIMELTM KAWANAEDHR RRILQKSDIA SAISKTDVFD FLEDIVPRDV GIPRSSIAQN FDLSMPPHQN VTYPPYYVPA MVTGRPIPDQ
201: NHHGP

Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.