Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15444 | Sorghum | nucleus | 94.5 | 94.03 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 79.0 | 79.4 |
| Zm00001d052838_P001 | Maize | nucleus | 80.0 | 79.21 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 78.5 | 78.89 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 78.0 | 78.39 |
| Zm00001d020874_P001 | Maize | extracellular | 77.0 | 77.0 |
| HORVU7Hr1G048760.3 | Barley | plastid | 79.0 | 60.77 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 37.0 | 54.41 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 39.0 | 49.06 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 34.0 | 46.58 |
| Zm00001d046967_P001 | Maize | nucleus | 55.0 | 44.35 |
| CDX93525 | Canola | nucleus | 48.5 | 44.09 |
| AT1G54830.3 | Thale cress | nucleus | 47.5 | 43.78 |
| Bra018589.1-P | Field mustard | nucleus | 48.0 | 43.64 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 51.5 | 43.46 |
| Bra030749.1-P | Field mustard | nucleus | 47.0 | 43.12 |
| Zm00001d036648_P001 | Maize | extracellular | 52.5 | 42.86 |
| Bra031651.1-P | Field mustard | nucleus | 48.5 | 42.54 |
| CDY06341 | Canola | nucleus | 48.5 | 42.54 |
| AT1G08970.4 | Thale cress | nucleus | 48.5 | 41.99 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 52.0 | 41.43 |
| Zm00001d026648_P001 | Maize | mitochondrion | 26.0 | 40.94 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 53.5 | 40.84 |
| Zm00001d028432_P001 | Maize | nucleus | 50.0 | 40.82 |
| PGSC0003DMT400023211 | Potato | nucleus | 52.0 | 40.62 |
| Solyc01g079870.2.1 | Tomato | nucleus | 52.0 | 40.31 |
| KRG96853 | Soybean | nucleus | 51.5 | 39.92 |
| PGSC0003DMT400008660 | Potato | nucleus | 50.0 | 39.68 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 54.5 | 39.07 |
| CDY22654 | Canola | cytosol | 49.0 | 38.58 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 37.5 | 38.46 |
| CDY31119 | Canola | nucleus | 36.5 | 38.22 |
| KRH43409 | Soybean | nucleus | 39.0 | 38.05 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 50.0 | 38.02 |
| KRG92828 | Soybean | nucleus | 49.5 | 37.64 |
| KRH33966 | Soybean | nucleus | 49.5 | 37.5 |
| KRH20896 | Soybean | nucleus | 34.5 | 35.94 |
| CDY32142 | Canola | mitochondrion, nucleus | 47.0 | 31.76 |
| KRH20891 | Soybean | nucleus | 37.5 | 30.86 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 48.0 | 29.36 |
| KRH20893 | Soybean | nucleus | 37.5 | 28.09 |
| Zm00001d023466_P001 | Maize | cytosol, mitochondrion, nucleus | 19.5 | 8.88 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100285814 | MapMan:15.5.51.3 | UniProt:B6UA50 | InterPro:CBFA_NFYB_domain | EMBL:EU974115 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | ProteinID:ONM02668.1 | PFAM:PF00808 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF46 | SUPFAM:SSF47113 | UniParc:UPI000152A2E6 | EnsemblPlantsGene:Zm00001d031310 | EnsemblPlants:Zm00001d031310_P001 |
| EnsemblPlants:Zm00001d031310_T001 | SEG:seg | : | : | : | : |
Description
CCAAT-HAP5-transcription factor 513Nuclear transcription factor Y subunit C-2
Coordinates
chr1:+:185845156..185845758
Molecular Weight (calculated)
21550.7 Da
IEP (calculated)
5.928
GRAVY (calculated)
-0.309
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKSTTPPP PPVMGAPIAY PPPPGAAYPA GPYVHAPAAA LYPPPPLPPA PPSSQQGAAA AHQQQLFWAE QYREIEATTD FKNHNLPLAR IKKIMKADED
101: VRMIAAEAPV VFSRACEMFI LELTHRGWAH AEENKRRTLQ KSDIAAAVAR TEVFDFLVDI VPRDEAKDAD SAAMGAAGIP HPAAGLPAAD PMGYYYVQPQ
101: VRMIAAEAPV VFSRACEMFI LELTHRGWAH AEENKRRTLQ KSDIAAAVAR TEVFDFLVDI VPRDEAKDAD SAAMGAAGIP HPAAGLPAAD PMGYYYVQPQ
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.