CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030749.1-P	Field mustard	nucleus	97.38	85.32
CDY06341	Canola	nucleus	87.96	73.68
CDX93525	Canola	nucleus	83.77	72.73
CDY32142	Canola	mitochondrion, nucleus	94.76	61.15
CDY22654	Canola	cytosol	78.01	58.66
CDX95019	Canola	cytosol, mitochondrion, nucleus	87.96	51.38
VIT_14s0128g00250.t01	Wine grape	nucleus	70.68	51.33
VIT_05s0020g02790.t01	Wine grape	nucleus	68.59	50.0
PGSC0003DMT400008660	Potato	nucleus	64.92	49.21
Solyc01g079870.2.1	Tomato	nucleus	64.92	48.06
PGSC0003DMT400023211	Potato	nucleus	64.4	48.05
CDX67737	Canola	nucleus	46.6	47.34
Os09t0480700-01	Rice	nucleus	39.27	44.64
CDY08084	Canola	nucleus	49.21	42.53
CDY05857	Canola	nucleus	49.21	42.53
Zm00001d020874_P001	Maize	extracellular	41.88	40.0
EER96945	Sorghum	nucleus	41.88	39.6
TraesCS5B01G255900.1	Wheat	nucleus	41.88	39.41
TraesCS5A01G256500.1	Wheat	nucleus	41.88	39.41
TraesCS5D01G265000.1	Wheat	nucleus	41.36	38.92
TraesCS7D01G237100.1	Wheat	nucleus	40.31	38.69
TraesCS7B01G135000.1	Wheat	nucleus	40.31	38.69
TraesCS7A01G239500.1	Wheat	nucleus	40.31	38.69
Zm00001d052838_P001	Maize	nucleus	40.31	38.12
EES15444	Sorghum	nucleus	39.79	37.81
Os08t0496500-01	Rice	nucleus	40.31	37.56
Zm00001d031310_P001	Maize	nucleus	38.22	36.5
GSMUA_Achr4P03920_001	Banana	nucleus	25.65	36.03
CDX84419	Canola	plastid	50.79	34.28
CDY48146	Canola	plastid	47.12	34.09
CDY66668	Canola	plastid	48.69	34.07
GSMUA_Achr4P13170_001	Banana	nucleus	24.61	32.19
GSMUA_Achr3P11990_001	Banana	nucleus	25.65	30.82
HORVU7Hr1G048760.3	Barley	plastid	40.31	29.62
GSMUA_Achr1P19420_001	Banana	nucleus	27.75	27.18
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.55	23.66
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	47.12	13.2

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	GO:A0A078H130	UniProt:A0A078H130	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY31119
ProteinID:CDY31119	ProteinID:CDY31119.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00047202001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI0004EEDA4A
SEG:seg	:	:	:	:	:

Description

BnaA08g26690DBnaA08g26690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H130]

Coordinates

chrLK032267:-:306715..307996

Molecular Weight (calculated)

21301.0 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.688

Length

191 amino acids

Sequence
(BLAST)

001: MDQQEHGQSR AMNYSTNPYQ TGSVGPTAPS GQMAFHQHHQ QQQLTQQLQK IMKADEDVRM ISAEAPVVFA RACEMFILEL TLRSWNHTEE NKRRTLQKND
101: IAAAVTRTDI FDFLVDIVPR EDLRDEVLGS IPRGTVPEAS ATGYPYGYLP SGTAPVGNAG MVMGNPDSAY PPNPYMGQPM WQHQEPGQPD Q

Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.