CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05857	Canola	nucleus	59.09	70.59
CDY08084	Canola	nucleus	58.71	70.14
GSMUA_Achr6P16620_001	Banana	cytosol	44.32	61.58
GSMUA_Achr10P...	Banana	nucleus	45.08	61.34
CDX84419	Canola	plastid	64.02	59.72
CDY66668	Canola	plastid	61.74	59.71
CDX67737	Canola	nucleus	37.12	52.13
HORVU4Hr1G062890.2	Barley	nucleus	45.08	49.38
TraesCS4B01G223000.1	Wheat	nucleus	45.08	49.17
TraesCS4D01G223400.1	Wheat	nucleus	45.08	49.17
TraesCS4A01G081000.1	Wheat	nucleus	44.7	48.96
Os03t0251350-00	Rice	nucleus	45.45	48.78
CDX93525	Canola	nucleus	40.15	48.18
CDY06341	Canola	nucleus	41.29	47.81
Zm00001d028432_P001	Maize	nucleus	43.94	47.35
CDY31119	Canola	nucleus	34.09	47.12
KXG39763	Sorghum	nucleus	43.94	46.96
CDY22654	Canola	cytosol	41.29	42.91
CDY32142	Canola	mitochondrion, nucleus	40.53	36.15
CDX95019	Canola	cytosol, mitochondrion, nucleus	42.42	34.25

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	GO:A0A078IDU2	UniProt:A0A078IDU2	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY48146
ProteinID:CDY48146	ProteinID:CDY48146.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00088944001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	SUPFAM:SSF47113	UniParc:UPI0004EE892A
SEG:seg	:	:	:	:	:

Description

BnaCnng15880DBnaCnng15880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDU2]

Coordinates

chrLK032755:-:149865..151032

Molecular Weight (calculated)

29561.1 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.381

Length

264 amino acids

Sequence
(BLAST)

001: MDNNNQQPPP PTSAAVIPPP GSTPVSPSRG ASSYHELLQQ QLQMFWNYQR TEIEQVNDFK NHQLPLARIK KIMKADEDVR MISAEAPILF AKACEIFILE
101: LTIRSWLHAE ENKRRTLQEN DIAAAITRTD IFDFLVDIVP REEEEEEEAA APAPYYYPPM GQPAGTMIGR PVVDHGGVYA QPQSQVWQSV WQSSGGGEDV
201: SYGSGGSSGG HGNIDNQGLL MLKSLHCLAL NYFERAWKDF RCCLVLKDQK LRLIFNPALD FACV

Best Arabidopsis Sequence Match ( AT5G63470.1 )
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Arabidopsis Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.