CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93525	Canola	nucleus	63.91	95.0
Bra018589.1-P	Field mustard	nucleus	63.61	94.55
CDY06341	Canola	nucleus	65.14	93.42
AT1G54830.3	Thale cress	nucleus	59.94	90.32
CDY31119	Canola	nucleus	51.38	87.96
CDY22654	Canola	cytosol	58.72	75.59
CDY32142	Canola	mitochondrion, nucleus	63.61	70.27
VIT_14s0128g00250.t01	Wine grape	nucleus	49.54	61.6
VIT_05s0020g02790.t01	Wine grape	nucleus	49.24	61.45
PGSC0003DMT400023211	Potato	nucleus	46.79	59.77
Solyc01g079870.2.1	Tomato	nucleus	47.09	59.69
PGSC0003DMT400008660	Potato	nucleus	45.57	59.13
CDX67737	Canola	nucleus	33.33	57.98
Os09t0480700-01	Rice	nucleus	28.75	55.95
CDY08084	Canola	nucleus	35.47	52.49
CDY05857	Canola	nucleus	35.47	52.49
TraesCS7D01G237100.1	Wheat	nucleus	31.5	51.76
TraesCS7A01G239500.1	Wheat	nucleus	31.5	51.76
TraesCS7B01G135000.1	Wheat	nucleus	31.19	51.26
TraesCS5B01G255900.1	Wheat	nucleus	31.5	50.74
TraesCS5A01G256500.1	Wheat	nucleus	31.5	50.74
GSMUA_Achr4P03920_001	Banana	nucleus	21.1	50.74
Zm00001d020874_P001	Maize	extracellular	30.89	50.5
TraesCS5D01G265000.1	Wheat	nucleus	31.19	50.25
EER96945	Sorghum	nucleus	30.89	50.0
Zm00001d052838_P001	Maize	nucleus	29.97	48.51
EES15444	Sorghum	nucleus	29.66	48.26
Zm00001d031310_P001	Maize	nucleus	29.36	48.0
Os08t0496500-01	Rice	nucleus	29.66	47.32
GSMUA_Achr4P13170_001	Banana	nucleus	20.49	45.89
GSMUA_Achr3P11990_001	Banana	nucleus	21.41	44.03
CDY48146	Canola	plastid	34.25	42.42
CDX84419	Canola	plastid	36.7	42.4
CDY66668	Canola	plastid	35.17	42.12
HORVU7Hr1G048760.3	Barley	plastid	32.42	40.77
GSMUA_Achr1P19420_001	Banana	nucleus	22.94	38.46
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.69	30.11
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	35.47	17.01

Protein Annotations

EnsemblPlants:CDX95019	EnsemblPlantsGene:GSBRNA2T00100534001	Gene3D:1.10.20.10	GO:A0A078E3D3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252
PANTHER:PTHR10252:SF75	PFAM:PF00808	ProteinID:CDX95019	ProteinID:CDX95019.1	SEG:seg	SUPFAM:SSF47113
UniParc:UPI0004EEB3ED	MapMan:15.5.51.3	:	:	:	:

Description

BnaC05g06520D

Coordinates

chrLK031886:-:712002..716343

Molecular Weight (calculated)

36933.8 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.641

Length

327 amino acids

Sequence
(BLAST)

001: MADQTRTAKH VESKNETSSD RSTRILTKAQ RLTRHPPFNA FHTYYTRFCC CCLLFPSLLK SKKEYQILKL KEYPTSVFPT IQLFLFSDSP YKSYSSGIMD
101: QQEHGQSGAM NYGTNPYQTN PMTTTAAGSV GPAAPQGQLA FHQIHQQQQQ QQLTQQLQVF WENQFKEIEK TTDFKNHSLP LARIKKIMKA DEDVRMISAE
201: APVVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA VTRTDIFDFL VDIVPREDLR DEVLGRGTAP EAAAAGYPYG YLPPGTGPIG NPGMVMGNPG
301: GAYPPNPYMG QPMWQQQQGP DQTDPEN

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.