Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018046.1-P | Field mustard | nucleus | 99.09 | 99.09 |
| CDY08084 | Canola | nucleus | 99.09 | 99.09 |
| AT5G63470.1 | Thale cress | plastid | 88.24 | 78.0 |
| Solyc06g072040.1.1 | Tomato | nucleus | 79.64 | 75.86 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 78.28 | 75.22 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 76.92 | 73.91 |
| KRH54177 | Soybean | nucleus | 75.11 | 72.49 |
| KRH63772 | Soybean | nucleus | 73.76 | 72.44 |
| CDX84419 | Canola | plastid | 88.24 | 68.9 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 79.19 | 68.9 |
| CDY66668 | Canola | plastid | 84.62 | 68.5 |
| CDY48146 | Canola | plastid | 70.59 | 59.09 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 60.18 | 55.19 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 60.18 | 54.96 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 60.18 | 54.96 |
| Os03t0251350-00 | Rice | nucleus | 61.09 | 54.88 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 59.73 | 54.77 |
| CDX67737 | Canola | nucleus | 45.7 | 53.72 |
| Zm00001d028432_P001 | Maize | nucleus | 59.28 | 53.47 |
| KXG39763 | Sorghum | nucleus | 59.28 | 53.04 |
| CDX93525 | Canola | nucleus | 50.23 | 50.45 |
| CDY06341 | Canola | nucleus | 52.04 | 50.44 |
| CDY31119 | Canola | nucleus | 42.53 | 49.21 |
| CDY22654 | Canola | cytosol | 49.32 | 42.91 |
| CDY32142 | Canola | mitochondrion, nucleus | 50.23 | 37.5 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 52.49 | 35.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | ProteinID:AHJ80503.1 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY05857 | ProteinID:CDY05857 |
| ProteinID:CDY05857.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00121648001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | SUPFAM:SSF47113 | UniParc:UPI0003F20B4B | GO:W8E7X7 |
| UniProt:W8E7X7 | SEG:seg | : | : | : | : |
Description
BnaC08g20340DBnaC08g20340D protein [Source:UniProtKB/TrEMBL;Acc:W8E7X7]
Coordinates
chrLK031966:-:66878..68171
Molecular Weight (calculated)
24302.9 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.414
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNNQQSSP SAAGIPPPVS AVGGASYHHL LQQQQQQLQM FWSYQRQEIE QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR
101: SWLHAEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREEI KEEPGIGGMM PPAVSGVPYY YPPMGGPGGM MIGRPAMDPS GVYVQPPSQA WQSVWQTSAT
201: GDDVSYGSGG SSGQGNLDGQ V
101: SWLHAEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREEI KEEPGIGGMM PPAVSGVPYY YPPMGGPGGM MIGRPAMDPS GVYVQPPSQA WQSVWQTSAT
201: GDDVSYGSGG SSGQGNLDGQ V
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.