CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX82214
CDX83320
CDX84419
CDY05857
CDY08084
CDY19582
CDY32408
CDY50075
CDY53021
CDY66668

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	CDX80136	AT2G47810.1	17138697
AT1G28050.1	CDX83320	AT2G47810.1	17138697
AT1G28050.1	CDY53021	AT2G47810.1	17138697
AT1G28050.1	CDX82214	AT3G21150.1	21798944
AT1G28050.1	CDY19582	AT3G21150.1	21798944
AT1G28050.1	CDY32408	AT3G21150.1	21798944
AT1G28050.1	CDY50075	AT3G21150.1	21798944
AT1G28050.1	CDX84419	AT5G63470.1	17138697
AT1G28050.1	CDY05857	AT5G63470.1	17138697
AT1G28050.1	CDY08084	AT5G63470.1	17138697
AT1G28050.1	CDY66668	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010908.1-P	Field mustard	nucleus	98.33	98.56
CDY11755	Canola	nucleus	87.83	93.64
CDY15696	Canola	nucleus	55.37	80.28
CDY30385	Canola	nucleus	70.64	76.49
CDY68819	Canola	nucleus	70.41	76.23
CDY66639	Canola	nucleus	73.03	75.93
AT1G28050.1	Thale cress	nucleus	75.18	72.75
CDY48428	Canola	nucleus	46.06	71.48
VIT_01s0146g00360.t01	Wine grape	nucleus	50.84	45.42
Solyc05g024010.2.1	Tomato	nucleus	47.26	43.81
PGSC0003DMT400065377	Potato	nucleus	46.78	43.27
VIT_14s0068g01380.t01	Wine grape	nucleus	41.29	38.53
KRH06865	Soybean	nucleus	31.03	34.12
KRG94656	Soybean	nucleus	31.03	33.77
GSMUA_Achr10P...	Banana	nucleus	36.04	32.97
CDY53026	Canola	nucleus	26.01	32.63
CDX80141	Canola	nucleus	25.78	32.53
GSMUA_Achr6P06130_001	Banana	nucleus	33.41	31.46
EES14176	Sorghum	nucleus	35.08	30.0
Os09t0509700-01	Rice	nucleus	30.79	29.93
GSMUA_Achr11P...	Banana	nucleus	35.8	28.96
Zm00001d031662_P001	Maize	nucleus	33.41	28.63
TraesCS7D01G264300.1	Wheat	nucleus	32.46	27.81
TraesCS7B01G161500.1	Wheat	nucleus	32.22	27.66
TraesCS7A01G263500.1	Wheat	nucleus	32.22	27.55
CDY48743	Canola	nucleus	22.91	27.43
CDY45597	Canola	nucleus	18.85	27.34
CDY36171	Canola	nucleus	18.85	27.24
CDY05691	Canola	nucleus	22.43	27.09
CDY69474	Canola	nucleus, plastid	6.21	27.08
CDY35952	Canola	nucleus	23.63	26.83
CDY07979	Canola	nucleus	22.43	26.7
CDY19821	Canola	nucleus	18.62	26.53
CDY22125	Canola	nucleus	23.15	26.5
CDX86318	Canola	nucleus	22.43	26.26
CDX88145	Canola	nucleus	18.38	26.19
CDX85321	Canola	nucleus	22.43	26.18
CDY28029	Canola	nucleus	23.15	26.08
CDX87105	Canola	nucleus, plastid	18.38	24.29
CDY02749	Canola	nucleus, plastid	14.8	23.94
CDX80476	Canola	nucleus, plastid	18.62	23.71
CDX74034	Canola	nucleus	21.96	23.59
CDX90969	Canola	nucleus	17.9	23.36
CDX85529	Canola	nucleus	17.66	23.34
CDY64255	Canola	nucleus	20.53	23.18
CDY71884	Canola	nucleus	16.23	23.05
CDY71818	Canola	nucleus	16.23	22.97
CDY55657	Canola	nucleus	20.53	22.28
CDY04213	Canola	nucleus	17.42	21.73
CDY26470	Canola	nucleus	16.95	21.32
CDX69493	Canola	nucleus	16.95	21.07
HORVU0Hr1G021050.5	Barley	cytosol	21.0	20.8
CDY25892	Canola	nucleus	15.99	20.12
CDY58843	Canola	nucleus, plastid	15.99	19.59
CDX69494	Canola	nucleus	16.95	19.29
CDY26469	Canola	nucleus	16.47	18.85
CDX74261	Canola	nucleus	10.02	18.42
CDX91989	Canola	nucleus	9.31	17.11
CDY49730	Canola	nucleus	8.59	16.51
CDY07393	Canola	nucleus	18.38	14.37

Protein Annotations

MapMan:15.5.1.2	GO:A0A078DNN9	InterPro:CCT_domain	EnsemblPlants:CDX90119	ProteinID:CDX90119	ProteinID:CDX90119.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00150639001	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI0004EEBE7E
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

BnaA08g18650D

Coordinates

chrLK031862:-:176937..179026

Molecular Weight (calculated)

46351.2 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.701

Length

419 amino acids

Sequence
(BLAST)

001: MSSSSERVPC DFCNERAAVL FCRADAAKLC LPCDRHVHTA NLLSKKHVRS QICDNCGSEP VSVRCFTDSL VLCQECDWDV HGSCSVSDAH VRSAIEGFTG
101: CPSALELGAL WGIDLEGRKE EEKQVPVTME SFGMELDSWI SGSDVLQELV VPVPKKGGSS CGRYKQMLGK QLEELLRSGG GGGVDDGECD GEAGEEGNMV
201: PEMQERLGWR RDEEEISGGG EVNQQPQTTS FTALLWNAAN TSDGQRQSTQ IWDFKLGQSR EPEDSSRMKA AYVTKDAASF KINSFVEVKK NDTCSTKAKG
301: VKEIFQDDYN QSTSGQVLTC ESNNLPITFG SEKGSNSSSE LNFTENIGGT SCKSTRRVAT KADLERLAQN RDNAMQRYKE KRKTRRYDKT IRYESRKARA
401: DTRLRVKGRF VKATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.