CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX82214
CDX83320
CDX84419
CDY05857
CDY08084
CDY19582
CDY32408
CDY50075
CDY53021
CDY66668

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	CDX80136	AT2G47810.1	17138697
AT1G28050.1	CDX83320	AT2G47810.1	17138697
AT1G28050.1	CDY53021	AT2G47810.1	17138697
AT1G28050.1	CDX82214	AT3G21150.1	21798944
AT1G28050.1	CDY19582	AT3G21150.1	21798944
AT1G28050.1	CDY32408	AT3G21150.1	21798944
AT1G28050.1	CDY50075	AT3G21150.1	21798944
AT1G28050.1	CDX84419	AT5G63470.1	17138697
AT1G28050.1	CDY05857	AT5G63470.1	17138697
AT1G28050.1	CDY08084	AT5G63470.1	17138697
AT1G28050.1	CDY66668	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30385	Canola	nucleus	92.59	64.6
CDY68819	Canola	nucleus	91.85	64.08
CDY11755	Canola	nucleus	70.37	48.35
CDX90119	Canola	nucleus	71.48	46.06
CDY66639	Canola	nucleus	67.78	45.41
AT1G28050.1	Thale cress	nucleus	68.89	42.96
CDY15696	Canola	nucleus	41.85	39.1
VIT_01s0146g00360.t01	Wine grape	nucleus	45.19	26.01
CDY69474	Canola	nucleus, plastid	8.89	25.0
Solyc05g024010.2.1	Tomato	nucleus	41.11	24.56
PGSC0003DMT400065377	Potato	nucleus	40.74	24.28
HORVU0Hr1G021050.5	Barley	cytosol	33.33	21.28
VIT_14s0068g01380.t01	Wine grape	nucleus	33.7	20.27
KRH06865	Soybean	nucleus	26.67	18.9
KRG94656	Soybean	nucleus	26.3	18.44
EES14176	Sorghum	nucleus	32.96	18.16
TraesCS7D01G264300.1	Wheat	nucleus	32.59	18.0
TraesCS7A01G263500.1	Wheat	nucleus	32.59	17.96
GSMUA_Achr10P...	Banana	nucleus	30.37	17.9
Os09t0509700-01	Rice	nucleus	28.15	17.63
TraesCS7B01G161500.1	Wheat	nucleus	31.85	17.62
Zm00001d031662_P001	Maize	nucleus	31.11	17.18
GSMUA_Achr6P06130_001	Banana	nucleus	28.15	17.08
CDY49730	Canola	nucleus	13.33	16.51
GSMUA_Achr11P...	Banana	nucleus	30.0	15.64
CDY53026	Canola	nucleus	18.89	15.27
CDX80141	Canola	nucleus	18.52	15.06
CDX74261	Canola	nucleus	12.59	14.91
CDX91989	Canola	nucleus	12.22	14.47
CDX88145	Canola	nucleus	13.7	12.59
CDY36171	Canola	nucleus	13.33	12.41
CDY02749	Canola	nucleus, plastid	11.85	12.36
CDY19821	Canola	nucleus	13.33	12.24
CDY45597	Canola	nucleus	12.96	12.11
CDY48743	Canola	nucleus	15.56	12.0
CDY35952	Canola	nucleus	16.3	11.92
CDY28029	Canola	nucleus	16.3	11.83
CDY22125	Canola	nucleus	15.93	11.75
CDY07979	Canola	nucleus	15.19	11.65
CDY05691	Canola	nucleus	14.81	11.53
CDX86318	Canola	nucleus	15.19	11.45
CDX80476	Canola	nucleus, plastid	13.7	11.25
CDX85321	Canola	nucleus	14.81	11.14
CDX87105	Canola	nucleus, plastid	12.96	11.04
CDX74034	Canola	nucleus	15.56	10.77
CDY58843	Canola	nucleus, plastid	13.33	10.53
CDY71884	Canola	nucleus	11.48	10.51
CDY71818	Canola	nucleus	11.48	10.47
CDY64255	Canola	nucleus	14.07	10.24
CDY25892	Canola	nucleus	12.59	10.21
CDX85529	Canola	nucleus	11.85	10.09
CDX90969	Canola	nucleus	11.48	9.66
CDY26470	Canola	nucleus	11.85	9.61
CDY55657	Canola	nucleus	13.7	9.59
CDX69493	Canola	nucleus	11.85	9.5
CDY26469	Canola	nucleus	11.85	8.74
CDX69494	Canola	nucleus	11.85	8.7
CDY04213	Canola	nucleus	8.15	6.55
CDY07393	Canola	nucleus	9.63	4.85

Protein Annotations

EnsemblPlants:CDY48428	EnsemblPlantsGene:GSBRNA2T00089460001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	ncoils:Coil
PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	PFAM:PF06203	PFscan:PS51017	ProteinID:CDY48428	ProteinID:CDY48428.1
SEG:seg	UniParc:UPI0004EE494C	UniProt:A0A078IH20	MapMan:35.1	:	:

Description

BnaCnng16410DBnaCnng16410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH20]

Coordinates

chrLK032772:-:128313..129527

Molecular Weight (calculated)

30029.4 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.746

Length

270 amino acids

Sequence
(BLAST)

001: MMMTMESFGM ELDSWVSGSN VLQIVPVTSD TTTFKKRSSS CGRYKQVLCK QLEEMLKGED NDGDGGGGEA KEGIMVIHQP PTTSFSSLMW NAANPSGGQS
101: TQIWDFNLEQ SREPQDTIRT EAAACVTKDA ASFKVNSIVK LLNDACSTKA KRVKEIFQDD YKRLASGQVP ATSENNNNLP ITFGSNTSNE LCFTENTGGT
201: SCNKATRVVA TKADLEQLAQ NRGNAMQRYK EKRKNRRYDK TIRYESRKAR ADTRLRVKGR FVKATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.