Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001043.1-P | Field mustard | nucleus | 98.68 | 98.68 |
| CDX91989 | Canola | nucleus | 77.63 | 77.63 |
| CDY69474 | Canola | nucleus, plastid | 26.75 | 63.54 |
| CDY71818 | Canola | nucleus | 64.91 | 50.0 |
| CDY71884 | Canola | nucleus | 63.6 | 49.15 |
| CDX85529 | Canola | nucleus | 48.25 | 34.7 |
| CDY49730 | Canola | nucleus | 32.89 | 34.4 |
| CDX69493 | Canola | nucleus | 50.0 | 33.83 |
| CDY26470 | Canola | nucleus | 48.25 | 33.03 |
| CDX90969 | Canola | nucleus | 46.05 | 32.71 |
| CDX69494 | Canola | nucleus | 50.0 | 30.98 |
| CDY26469 | Canola | nucleus | 49.12 | 30.6 |
| CDY45597 | Canola | nucleus | 35.53 | 28.03 |
| CDY36171 | Canola | nucleus | 35.09 | 27.59 |
| CDY19821 | Canola | nucleus | 35.53 | 27.55 |
| CDX88145 | Canola | nucleus | 34.21 | 26.53 |
| CDX87105 | Canola | nucleus, plastid | 35.96 | 25.87 |
| CDY02749 | Canola | nucleus, plastid | 28.95 | 25.48 |
| CDX80476 | Canola | nucleus, plastid | 35.53 | 24.62 |
| CDY58843 | Canola | nucleus, plastid | 35.09 | 23.39 |
| CDY25892 | Canola | nucleus | 32.02 | 21.92 |
| CDY48428 | Canola | nucleus | 14.91 | 12.59 |
| CDY15696 | Canola | nucleus | 15.35 | 12.11 |
| CDX80141 | Canola | nucleus | 17.54 | 12.05 |
| CDY53026 | Canola | nucleus | 17.54 | 11.98 |
| CDY11755 | Canola | nucleus | 19.74 | 11.45 |
| CDY07979 | Canola | nucleus | 17.54 | 11.36 |
| CDY22125 | Canola | nucleus | 17.54 | 10.93 |
| CDY66639 | Canola | nucleus | 19.3 | 10.92 |
| CDY35952 | Canola | nucleus | 17.54 | 10.84 |
| CDY28029 | Canola | nucleus | 17.54 | 10.75 |
| CDY64255 | Canola | nucleus | 17.11 | 10.51 |
| CDY48743 | Canola | nucleus | 15.79 | 10.29 |
| CDX74034 | Canola | nucleus | 17.54 | 10.26 |
| CDY55657 | Canola | nucleus | 17.11 | 10.1 |
| CDY05691 | Canola | nucleus | 15.35 | 10.09 |
| CDX86318 | Canola | nucleus | 15.79 | 10.06 |
| CDX85321 | Canola | nucleus | 15.79 | 10.03 |
| CDX90119 | Canola | nucleus | 18.42 | 10.02 |
| CDY30385 | Canola | nucleus | 16.23 | 9.56 |
| CDY68819 | Canola | nucleus | 16.23 | 9.56 |
| CDY04213 | Canola | nucleus | 8.33 | 5.65 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 5.7 | 4.58 |
| CDY07393 | Canola | nucleus | 10.53 | 4.48 |
Protein Annotations
| EnsemblPlants:CDX74261 | EnsemblPlantsGene:GSBRNA2T00112045001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDX74261 |
| ProteinID:CDX74261.1 | SEG:seg | UniParc:UPI0004EDFC60 | MapMan:35.1 | : | : |
Description
BnaA03g27860D
Coordinates
chrLK031800:+:1980222..1981099
Molecular Weight (calculated)
26127.1 Da
IEP (calculated)
5.208
GRAVY (calculated)
-0.932
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKEETNESG FVAGKEDDEA DREVASWLML NAGKDSDNHN NGFLFGVEYL DLVDYSSSVD NQFEDQYSHY QRSFGGEDGV VPLQVEEPKS YQKQSHHNYG
101: HYNYNGSLKD LNHTVSVSSM DITVVPESTE SDTTVQYYKE TIDQLSGPPS QMVQQLTPAD REARVQRYRE KKKRRKFEKT IRYASRKAYA EIRPRIKGRF
201: AKRTETEADA EQLFSTSLMA GYGIVPSF
101: HYNYNGSLKD LNHTVSVSSM DITVVPESTE SDTTVQYYKE TIDQLSGPPS QMVQQLTPAD REARVQRYRE KKKRRKFEKT IRYASRKAYA EIRPRIKGRF
201: AKRTETEADA EQLFSTSLMA GYGIVPSF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.