CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69493
CDX70553
CDX78568
CDX78656
CDX85529
CDX85608
CDX86817
CDX90969
CDX91076
CDY12145
CDY25880
CDY26433
CDY26470
CDY40851
CDY50512
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15850.1	CDY25880	AT1G53090.1	16854975
AT5G15850.1	CDY50512	AT1G53090.1	16854975
AT5G15850.1	CDY25880	AT1G53090.1	18812498
AT5G15850.1	CDY50512	AT1G53090.1	18812498
AT5G15850.1	CDY12145	AT2G32950.1	18812498
AT5G15850.1	CDY52540	AT2G32950.1	18812498
AT5G15850.1	CDX86817	AT4G11110.1	16854975
AT5G15850.1	CDY40851	AT4G11110.1	16854975
AT5G15850.1	CDX70553	AT5G14250.1	18812498
AT5G15850.1	CDX78568	AT5G14250.1	18812498
AT5G15850.1	CDX78656	AT5G14250.1	18812498
AT5G15850.1	CDX85608	AT5G14250.1	18812498
AT5G15850.1	CDX91076	AT5G14250.1	18812498
AT5G15850.1	CDY26433	AT5G14250.1	18812498
AT5G15850.1	CDX69493	AT5G15850.1	18812498
AT5G15850.1	CDX85529	AT5G15850.1	18812498
AT5G15850.1	CDX90969	AT5G15850.1	18812498
AT5G15850.1	CDY26470	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85529	Canola	nucleus	92.52	93.69
CDY69474	Canola	nucleus, plastid	22.12	73.96
CDY26470	Canola	nucleus	74.14	71.47
CDX69493	Canola	nucleus	74.77	71.22
AT5G15850.1	Thale cress	nucleus	68.54	61.97
CDY71884	Canola	nucleus	51.09	55.59
CDY71818	Canola	nucleus	51.09	55.41
Solyc02g089500.2.1	Tomato	nucleus	23.36	52.82
KRH18308	Soybean	nucleus	53.58	47.65
KRH45169	Soybean	nucleus	50.47	46.55
CDY26469	Canola	nucleus	52.65	46.17
CDX74261	Canola	nucleus	32.71	46.05
CDX69494	Canola	nucleus	52.65	45.92
CDX91989	Canola	nucleus	32.4	45.61
KRH01455	Soybean	nucleus	49.84	45.45
KRG93763	Soybean	nucleus	51.71	45.36
VIT_14s0083g00640.t01	Wine grape	nucleus	54.83	45.01
CDY36171	Canola	nucleus	38.63	42.76
CDY45597	Canola	nucleus	38.32	42.56
PGSC0003DMT400026065	Potato	nucleus	53.58	41.65
CDY19821	Canola	nucleus	37.69	41.16
PGSC0003DMT400026068	Potato	nucleus	50.78	40.25
CDY02749	Canola	nucleus, plastid	32.4	40.15
CDX88145	Canola	nucleus	36.45	39.8
CDX87105	Canola	nucleus, plastid	37.07	37.54
CDX80476	Canola	nucleus, plastid	37.69	36.78
CDY58843	Canola	nucleus, plastid	35.83	33.63
CDY25892	Canola	nucleus	33.96	32.73
CDY49730	Canola	nucleus	18.07	26.61
CDY15696	Canola	nucleus	22.12	24.57
CDY07979	Canola	nucleus	25.55	23.3
CDY48743	Canola	nucleus	23.68	21.71
CDX80141	Canola	nucleus	22.43	21.69
CDY53026	Canola	nucleus	22.43	21.56
CDY35952	Canola	nucleus	24.61	21.41
CDY05691	Canola	nucleus	23.05	21.33
CDY28029	Canola	nucleus	24.61	21.24
CDY22125	Canola	nucleus	23.68	20.77
CDX74034	Canola	nucleus	24.92	20.51
CDX86318	Canola	nucleus	22.12	19.83
CDX85321	Canola	nucleus	22.12	19.78
CDY66639	Canola	nucleus	23.99	19.11
CDY64255	Canola	nucleus	21.5	18.6
CDY11755	Canola	nucleus	22.43	18.32
CDY68819	Canola	nucleus	21.81	18.09
CDY30385	Canola	nucleus	21.81	18.09
HORVU0Hr1G022380.1	Barley	cytosol	15.89	17.96
CDX90119	Canola	nucleus	23.36	17.9
CDY55657	Canola	nucleus	21.5	17.88
CDY04213	Canola	nucleus	16.2	15.48
CDY48428	Canola	nucleus	9.66	11.48
CDY07393	Canola	nucleus	17.13	10.26

Protein Annotations

MapMan:15.5.1.2	GO:A0A078DR79	InterPro:CCT_domain	EnsemblPlants:CDX90969	ProteinID:CDX90969	ProteinID:CDX90969.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00151724001	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI0004EDC786
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

BnaC02g06280D

Coordinates

chrLK031865:+:33238..34203

Molecular Weight (calculated)

35865.3 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.510

Length

321 amino acids

Sequence
(BLAST)

001: MLKQERNRTK VCNTCRSAAC NTCRSAACTV YCRADSAYLC ATCDAQVHAA NLLASRHERV RVCEACERAP AAFFCKADAA SLCIACDSQV HLANPLARRH
101: QRVPILPISS MATNHSSETT AMTDPENIVV MGQEEEDETE VASWLLPSSE KNNNNSLDLV DCQQDYNVVP RSRYARDGVV PLQVEESKAH VHHEQHNFQF
201: GFTNVSSGCH MVSLVLESTS SDTTVLLHSP SPKAATDQLP DPSTQIFSPG EREARVMRYR EKKKTRKFEK RVRYASRKAY AETRPRIKGR FVKREEVDAE
301: ADQGFPTMIM FNTGYGVVPS L

Best Arabidopsis Sequence Match ( AT5G15850.1 )
(BLAST)

001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF

Arabidopsis Description

COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.