Factsheet for PGSC0003DMT400026065

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400029608
PGSC0003DMT400031699
PGSC0003DMT400036075
PGSC0003DMT400039254
PGSC0003DMT400039470
PGSC0003DMT400039600
PGSC0003DMT400051746
PGSC0003DMT400051934
PGSC0003DMT400052100
PGSC0003DMT400068177
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02380.1	PGSC0003DMT400068177	AT3G21150.1	21798944
AT5G15840.1	PGSC0003DMT400036075	AT2G32950.1	18296627
AT5G15840.1	PGSC0003DMT400036075	AT2G32950.1	18388858
AT5G15840.1	PGSC0003DMT400029608	AT2G47810.1	17138697
AT5G15840.1	PGSC0003DMT400051746	AT3G24650.1	10743655
AT5G15840.1	PGSC0003DMT400051934	AT3G24650.1	10743655
AT5G15840.1	PGSC0003DMT400039470	AT3G48590.1	17138697
AT5G15840.1	PGSC0003DMT400039254	AT5G50470.1	17138697
AT5G15840.1	PGSC0003DMT400039254	AT5G50480.1	17138697
AT5G15840.1	PGSC0003DMT400039254	AT5G50490.1	17138697
AT5G15840.1	PGSC0003DMT400078676	AT5G65683.1	21798944
AT5G15850.1	PGSC0003DMT400039600	AT1G53090.1	16854975
AT5G15850.1	PGSC0003DMT400039600	AT1G53090.1	18812498
AT5G15850.1	PGSC0003DMT400036075	AT2G32950.1	18812498
AT5G15850.1	PGSC0003DMT400031699	AT4G11110.1	16854975
AT5G15850.1	PGSC0003DMT400052100	AT5G14250.1	18812498
AT5G15850.1	PGSC0003DMT400026065	AT5G15850.1	18812498
AT5G15850.1	PGSC0003DMT400026068	AT5G15850.1	18812498

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089540.2.1	Tomato	nucleus	91.04	96.16
PGSC0003DMT400026068	Potato	nucleus	86.2	87.9
VIT_14s0083g00640.t01	Wine grape	nucleus	67.55	71.36
KRH45169	Soybean	nucleus	54.96	65.23
KRH01455	Soybean	nucleus	55.21	64.77
AT3G02380.1	Thale cress	nucleus	51.82	61.67
KRH18308	Soybean	nucleus	53.75	61.5
KRG93763	Soybean	nucleus	54.48	61.48
Bra021464.1-P	Field mustard	nucleus	47.46	61.06
CDY71818	Canola	nucleus	43.58	60.81
CDY71884	Canola	nucleus	43.34	60.68
CDX69493	Canola	nucleus	46.97	57.57
CDY26470	Canola	nucleus	45.76	56.76
Bra008668.1-P	Field mustard	nucleus	46.25	56.68
AT5G15850.1	Thale cress	nucleus	48.67	56.62
Bra023541.1-P	Field mustard	nucleus	42.37	55.56
CDX85529	Canola	nucleus	42.13	54.89
CDX90969	Canola	nucleus	41.65	53.58
GSMUA_Achr3P28130_001	Banana	nucleus	36.08	53.21
AT5G15840.1	Thale cress	nucleus	47.22	52.28
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	34.87	49.48
Bra008669.1-P	Field mustard	nucleus	43.34	48.91
GSMUA_Achr4P18680_001	Banana	nucleus	10.41	48.86
CDX69494	Canola	nucleus	43.34	48.64
CDY26469	Canola	nucleus	42.86	48.36
PGSC0003DMT400067657	Potato	nucleus	39.23	46.69
PGSC0003DMT400075520	Potato	nucleus	39.71	45.94
PGSC0003DMT400070680	Potato	nucleus	38.01	40.78
PGSC0003DMT400068637	Potato	nucleus	23.73	36.98
PGSC0003DMT400016342	Potato	nucleus	23.24	36.36
PGSC0003DMT400092769	Potato	nucleus	21.31	33.98
HORVU0Hr1G022380.1	Barley	cytosol	16.46	23.94
PGSC0003DMT400044878	Potato	nucleus	21.31	21.41
PGSC0003DMT400074143	Potato	nucleus	20.82	21.08
PGSC0003DMT400013624	Potato	nucleus	21.07	21.07
PGSC0003DMT400029591	Potato	nucleus	18.4	20.05
PGSC0003DMT400003198	Potato	nucleus	19.13	18.72
PGSC0003DMT400065377	Potato	nucleus	18.64	17.0
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	17.43	14.72

Protein Annotations

MapMan:15.5.1.2	ProteinID:ABF17844	ProteinID:ABF17844.1	ProteinID:ABF56053	ProteinID:ABF56053.2	ProteinID:ABO43707
ProteinID:ABO43707.1	ProteinID:ABO43709	ProteinID:ABO43709.1	ProteinID:ABO43711	ProteinID:ABO43711.1	ProteinID:ABO43713
ProteinID:ABO43713.1	ProteinID:ABO43715	ProteinID:ABO43715.1	ProteinID:ABO43724	ProteinID:ABO43724.1	ProteinID:ADO40093
ProteinID:ADO40093.1	ProteinID:ADO40094	ProteinID:ADO40094.1	InterPro:CCT_domain	EMBL:DQ472734	EMBL:DQ499754
EMBL:EF143442	EMBL:EF143444	EMBL:EF143446	EMBL:EF143448	EMBL:EF143450	EMBL:EF433577
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	EMBL:HM231143	EMBL:HM231144	InterPro:IPR000315	InterPro:IPR010402
EMBL:KX576511	UniProt:M1AML5	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG402010056	PGSC:PGSC0003DMG402010056
EnsemblPlants:PGSC0003DMT400026065	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336
UniParc:UPI000295B25F	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG402010056]

Coordinates

chr2:+:45088023..45092647

Molecular Weight (calculated)

45876.3 Da

IEP (calculated)

6.188

GRAVY (calculated)

-0.683

Length

413 amino acids

Sequence
(BLAST)

001: MLKKEKSGGF DGSSNNWARV CDSCHSATCT VYCRADSAYL CADCDARIHA ASLMASRHER VWVCEACERA PAAFLCKADA ASLCASCDVD IHSANPLARR
101: HHRVPIMPIP GTLYGPPAVH TVSGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDEN EAASWLLLNP PVKNNNKNNI NNNNNNQNNN YGMLFGGEVV
201: DEYLDLAEYG GDSQFNDQYS VNQQQQHYSV PQKSYVEDSV VPVQNGQRKS LILYHQPQQQ QQQQQQSHHL NFQLGMEYDN SNTGYGYPAS LSHSVSISSM
301: DVSVVPESAL SETSNSHPRP PKGTIDLFSG PPIQIPPQLT PMDREARVLR YREKKKNRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVK AEVDQMFSTQ
401: LMTDSSYGIV PSF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.