Factsheet for PGSC0003DMT400039254

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400065377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50470.1	PGSC0003DMT400065377	AT1G28050.1	17138697
AT5G50470.1	PGSC0003DMT400026065	AT5G15840.1	17138697
AT5G50470.1	PGSC0003DMT400026068	AT5G15840.1	17138697
AT5G50480.1	PGSC0003DMT400065377	AT1G28050.1	17138697
AT5G50480.1	PGSC0003DMT400026065	AT5G15840.1	17138697
AT5G50480.1	PGSC0003DMT400026068	AT5G15840.1	17138697
AT5G50490.1	PGSC0003DMT400065377	AT1G28050.1	17138697
AT5G50490.1	PGSC0003DMT400026065	AT5G15840.1	17138697
AT5G50490.1	PGSC0003DMT400026068	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111450.1.1	Tomato	nucleus	84.98	67.61
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.13	43.04
PGSC0003DMT400090065	Potato	nucleus	22.92	39.19
AT5G50490.1	Thale cress	cytosol	26.48	36.02
PGSC0003DMT400039471	Potato	nucleus	20.95	34.42
PGSC0003DMT400023211	Potato	nucleus	33.99	33.59
AT5G50470.1	Thale cress	nucleus	27.27	32.55
PGSC0003DMT400008660	Potato	nucleus	32.41	32.54
AT5G27910.1	Thale cress	nucleus	23.72	32.09
AT5G50480.1	Thale cress	nucleus	24.9	31.19

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102581099	MapMan:15.5.51.3	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1B803	PFAM:PF00808	EnsemblPlantsGene:PGSC0003DMG400015177	PGSC:PGSC0003DMG400015177
EnsemblPlants:PGSC0003DMT400039254	PANTHER:PTHR10252	PANTHER:PTHR10252:SF68	SUPFAM:SSF47113	UniParc:UPI000295A7B3	RefSeq:XP_006351461.1
SEG:seg	:	:	:	:	:

Description

CONSTANS interacting protein 2a [Source:PGSC_GENE;Acc:PGSC0003DMG400015177]

Coordinates

chr3:-:51032926..51036036

Molecular Weight (calculated)

27674.4 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.260

Length

253 amino acids

Sequence
(BLAST)

001: MENNHQQSAE PLYPGYPFHQ MLMLQQHEQL QLQQQQQVEQ QMRIFWNCQR EEIEELDDFK HHQFPISRIK RIIKSENNVL KVSAETPILF SKACELFVLE
101: LTLRSWFHAQ ENNRGTLKKT DFAAAIRRTE IFDFLADVVP ADEINEVATG FGPGMVGPTA GGGFPYFYPP MGQLAMPGVM LGGPAMPGVM PGGLAMPGPM
201: LGGPAMPEVM IGGPAMPVVA PSVYVQPPLQ AWQPAGDNSN AGGGNGGQGN FGP

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.