Factsheet for PGSC0003DMT400039470

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400065377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48590.1	PGSC0003DMT400065377	AT1G28050.1	17138697
AT3G48590.1	PGSC0003DMT400026065	AT5G15840.1	17138697
AT3G48590.1	PGSC0003DMT400026068	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	98.26	98.26
Bra018046.1-P	Field mustard	nucleus	75.65	78.73
CDY08084	Canola	nucleus	75.65	78.73
CDY05857	Canola	nucleus	75.22	78.28
KRH54177	Soybean	nucleus	75.65	75.98
AT3G48590.1	Thale cress	nucleus	76.09	74.79
KRH63772	Soybean	nucleus	73.04	74.67
GSMUA_Achr6P16620_001	Banana	cytosol	60.43	73.16
VIT_17s0000g01130.t01	Wine grape	nucleus	80.0	72.44
GSMUA_Achr10P...	Banana	nucleus	58.7	69.59
Bra038636.1-P	Field mustard	nucleus, plastid	74.78	63.24
CDX84419	Canola	plastid	74.35	60.42
CDY66668	Canola	plastid	70.43	59.34
HORVU4Hr1G062890.2	Barley	nucleus	59.13	56.43
TraesCS4D01G223400.1	Wheat	nucleus	59.13	56.2
TraesCS4B01G223000.1	Wheat	nucleus	59.13	56.2
TraesCS4A01G081000.1	Wheat	nucleus	58.7	56.02
Os03t0251350-00	Rice	nucleus	59.13	55.28
Zm00001d028432_P001	Maize	nucleus	57.83	54.29
KXG39763	Sorghum	nucleus	57.83	53.85
PGSC0003DMT400090065	Potato	nucleus	32.61	50.68
PGSC0003DMT400008660	Potato	nucleus	52.17	47.62
PGSC0003DMT400023211	Potato	nucleus	51.3	46.09
PGSC0003DMT400039471	Potato	nucleus	30.43	45.45
PGSC0003DMT400039254	Potato	nucleus	43.04	39.13

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102597101	MapMan:15.5.51.3	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0046982
GO:GO:0048579	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1B8B6	PFAM:PF00808	EnsemblPlantsGene:PGSC0003DMG402015259
PGSC:PGSC0003DMG402015259	EnsemblPlants:PGSC0003DMT400039470	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	SUPFAM:SSF47113	UniParc:UPI0002958474
RefSeq:XP_006351509.1	SEG:seg	:	:	:	:

Description

CONSTANS interacting protein 2a [Source:PGSC_GENE;Acc:PGSC0003DMG402015259]

Coordinates

chr3:+:50459294..50464194

Molecular Weight (calculated)

25264.9 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.501

Length

230 amino acids

Sequence
(BLAST)

001: MENSPQQSAA NAAAAAAAAQ SAGYPTQPPY HHLLQQQQQQ LQMFWTYQRQ EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL
101: TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKEEDAGL GPGMVGSTAS GVPYYYPPMG QPAPPGVMMG RPAMPGVDPS MYVQPPPPPS
201: QAWQSVWQAA EDNSYAGGGS NGQGNLDGQS

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.