Factsheet for Bra018046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010908.1-P
Bra030070.1-P
Bra041077.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63470.1	Bra010908.1-P	AT1G28050.1	17138697
AT5G63470.1	Bra030070.1-P	AT1G28050.1	17138697
AT5G63470.1	Bra041077.1-P	AT1G28050.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08084	Canola	nucleus	100.0	100.0
CDY05857	Canola	nucleus	99.09	99.09
AT5G63470.1	Thale cress	plastid	87.33	77.2
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.73	75.65
Solyc06g072040.1.1	Tomato	nucleus	78.73	75.0
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	77.38	74.35
KRH63772	Soybean	nucleus	74.21	72.89
KRH54177	Soybean	nucleus	75.11	72.49
Bra038636.1-P	Field mustard	nucleus, plastid	87.78	71.32
GSMUA_Achr6P16620_001	Banana	cytosol	60.18	70.0
GSMUA_Achr10P...	Banana	nucleus	60.18	68.56
VIT_17s0000g01130.t01	Wine grape	nucleus	78.28	68.11
Bra003334.1-P	Field mustard	nucleus	47.06	56.52
HORVU4Hr1G062890.2	Barley	nucleus	59.73	54.77
TraesCS4B01G223000.1	Wheat	nucleus	59.73	54.55
TraesCS4D01G223400.1	Wheat	nucleus	59.73	54.55
Os03t0251350-00	Rice	nucleus	60.63	54.47
TraesCS4A01G081000.1	Wheat	nucleus	59.28	54.36
Zm00001d028432_P001	Maize	nucleus	58.82	53.06
KXG39763	Sorghum	nucleus	58.82	52.63
Bra030749.1-P	Field mustard	nucleus	50.23	50.92
Bra031651.1-P	Field mustard	nucleus	52.04	50.44
Bra018589.1-P	Field mustard	nucleus	49.77	50.0

Protein Annotations

EnsemblPlants:Bra018046.1	EnsemblPlants:Bra018046.1-P	EnsemblPlantsGene:Bra018046	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI000253F2A7	UniProt:M4DNF9	MapMan:15.5.51.3	:

Description

AT3G48590 (E=6e-079) HAP5A, ATHAP5A, NF-YC1 | NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor

Coordinates

chrA06:+:9771845..9772510

Molecular Weight (calculated)

24245.8 Da

IEP (calculated)

4.848

GRAVY (calculated)

-0.400

Length

221 amino acids

Sequence
(BLAST)

001: MDNSNQQSSP SAAGIPPPVS AVGGASYHHL LQQQQQQLQM FWSYQRQEIE QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR
101: SWLHAEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREEI KEEPGIGGMM PPAVSGVPYY YPPMGGPGGM MIGRPAMDPS GVYVQPPSQA WQSVWQTSAT
201: GDDVSYGSGG SGGQGNLDGQ V

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.