Factsheet for Bra041077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000462.1-P
Bra001815.1-P
Bra004428.1-P
Bra018046.1-P
Bra031255.1-P
Bra038636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	Bra000462.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra004428.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra001815.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra031255.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra018046.1-P	AT5G63470.1	17138697
AT1G28050.1	Bra038636.1-P	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68819	Canola	nucleus	91.91	96.9
CDY30385	Canola	nucleus	91.42	96.38
Bra030070.1-P	Field mustard	nucleus	56.86	75.32
Bra010908.1-P	Field mustard	nucleus	73.53	71.77
AT1G28050.1	Thale cress	nucleus	72.55	68.36
VIT_01s0146g00360.t01	Wine grape	nucleus	48.77	42.43
Solyc05g024010.2.1	Tomato	nucleus	46.81	42.26
PGSC0003DMT400065377	Potato	nucleus	46.32	41.72
VIT_14s0068g01380.t01	Wine grape	nucleus	41.42	37.64
KRH06865	Soybean	nucleus	30.64	32.81
KRG94656	Soybean	nucleus	30.88	32.73
GSMUA_Achr10P...	Banana	nucleus	36.52	32.53
Bra004423.1-P	Field mustard	nucleus	26.47	32.34
GSMUA_Achr6P06130_001	Banana	nucleus	33.09	30.34
EES14176	Sorghum	nucleus	36.27	30.2
Os09t0509700-01	Rice	nucleus	31.86	30.16
TraesCS7D01G264300.1	Wheat	nucleus	35.54	29.65
TraesCS7A01G263500.1	Wheat	nucleus	35.54	29.59
TraesCS7B01G161500.1	Wheat	nucleus	35.05	29.3
GSMUA_Achr11P...	Banana	nucleus	37.01	29.15
Zm00001d031662_P001	Maize	nucleus	34.8	29.04
Bra020709.1-P	Field mustard	nucleus	23.28	27.07
Bra032061.1-P	Field mustard	nucleus	19.12	26.99
Bra040020.1-P	Field mustard	nucleus	23.53	26.23
Bra001264.1-P	Field mustard	nucleus	22.55	26.21
Bra029666.1-P	Field mustard	nucleus	23.77	25.13
Bra037499.1-P	Field mustard	nucleus	21.08	24.93
Bra036528.1-P	Field mustard	nucleus	19.85	23.48
Bra009805.1-P	Field mustard	nucleus	20.1	23.36
Bra023541.1-P	Field mustard	nucleus	17.89	23.17
HORVU0Hr1G021050.5	Barley	cytosol	23.04	22.22
Bra023858.1-P	Field mustard	nucleus	20.34	21.5
Bra008668.1-P	Field mustard	nucleus	17.4	21.07
Bra008669.1-P	Field mustard	nucleus	18.87	21.04
Bra020425.1-P	Field mustard	nucleus, plastid	17.4	20.76
Bra021464.1-P	Field mustard	nucleus	15.44	19.63
Bra002709.1-P	Field mustard	nucleus	9.56	17.89
Bra001043.1-P	Field mustard	nucleus	9.8	17.54

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra041077	EnsemblPlants:Bra041077.1	EnsemblPlants:Bra041077.1-P	InterPro:CCT_domain	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4FIZ8
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20
SMART:SM00336	UniParc:UPI000253ECAD	InterPro:Znf_B-box	SEG:seg	:	:

Description

AT1G28050 (E=2e-067) | zinc finger (B-box type) family protein

Coordinates

chrScaffold000467:+:3153..4681

Molecular Weight (calculated)

45471.9 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.534

Length

408 amino acids

Sequence
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL SCDHHVHKAN LLSRKHVRSR ICDNCGNEPV SVRCFTDDLV LCQECDWDVH GSCSHVRSAV EGFSGCPSAL
101: ELAALLGVDL EGRKQEKEMS LMMMMTMESF GMELDSWSFG SNVLQELIVP VTDHTTTFKK RSSSCWRFKQ VLCKQLEELL KGEDNDGDGG GGEAKEGIMV
201: PVMPERLGWA RDADDSEFIH QPPTTTSFSS LISGCQSTTQ IWDFNLGQSR EPEDTIRTEA AACVTKDVAS FKVNSIVKLL NDACSTKAKR VKEIFQDGYK
301: RSTSGQVPAT SENNNNLPIT FGSNTSNELC FTENTGGTSC NKATRVVAIK ADLEKLAQNR GNAMQRYKEK RKNRRYDKTI RYESRKARAD TRLRVKGRFV
401: KATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.