Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005541.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | Bra005541.1-P | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45597 | Canola | nucleus | 98.96 | 98.96 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 78.89 | 77.55 |
| Bra036528.1-P | Field mustard | nucleus | 64.01 | 53.62 |
| Bra009805.1-P | Field mustard | nucleus | 64.01 | 52.71 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 57.79 | 46.26 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 48.1 | 40.64 |
| Bra008668.1-P | Field mustard | nucleus | 46.71 | 40.06 |
| Bra023541.1-P | Field mustard | nucleus | 43.6 | 40.0 |
| Bra021464.1-P | Field mustard | nucleus | 42.91 | 38.63 |
| Bra002709.1-P | Field mustard | nucleus | 26.99 | 35.78 |
| Bra001043.1-P | Field mustard | nucleus | 28.03 | 35.53 |
| Bra008669.1-P | Field mustard | nucleus | 42.91 | 33.88 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 41.87 | 32.79 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 40.83 | 31.98 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 40.83 | 31.89 |
| Os06t0275000-01 | Rice | mitochondrion | 40.48 | 29.62 |
| EER88227 | Sorghum | nucleus | 41.87 | 29.44 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 42.56 | 28.74 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 38.06 | 28.72 |
| OQU85473 | Sorghum | nucleus | 36.33 | 28.69 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 37.72 | 28.46 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 37.02 | 27.79 |
| Bra030070.1-P | Field mustard | nucleus | 25.61 | 24.03 |
| Bra004423.1-P | Field mustard | nucleus | 25.95 | 22.46 |
| Bra001264.1-P | Field mustard | nucleus | 24.91 | 20.51 |
| Bra029666.1-P | Field mustard | nucleus | 26.3 | 19.69 |
| Bra040020.1-P | Field mustard | nucleus | 24.91 | 19.67 |
| Bra020709.1-P | Field mustard | nucleus | 23.53 | 19.37 |
| Bra010908.1-P | Field mustard | nucleus | 27.68 | 19.14 |
| Bra041077.1-P | Field mustard | nucleus | 26.99 | 19.12 |
| Bra037499.1-P | Field mustard | nucleus | 21.8 | 18.26 |
| Bra023858.1-P | Field mustard | nucleus | 22.84 | 17.1 |
Protein Annotations
| MapMan:15.5.1.2 | EnsemblPlantsGene:Bra032061 | EnsemblPlants:Bra032061.1 | EnsemblPlants:Bra032061.1-P | InterPro:CCT_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010099 | GO:GO:0010161 |
| GO:GO:0043565 | InterPro:IPR000315 | InterPro:IPR010402 | UniProt:M4ETD1 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 | UniParc:UPI0002544D2F |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
AT2G24790 (E=3e-108) COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding
Coordinates
chrA04:+:11170467..11171409
Molecular Weight (calculated)
31503.1 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.356
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRPCDSCR SAAATLFCRA DAAFLCGECD GKIHTANKLA SRHERVLLCQ VCEQSPAHVT CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSN
101: ADVSMEAASW LLRNPSVKEG GVEIPNLFAD LDYSGVDPKM EASENSSGND GVVPVQTRAL FLSEDYFNFD ISASKTTFPH GFSCINQTVS STSLDVPLVP
201: EGGAVAEMSR TTAAPALQLS PAEREARVLR YREKRKNRKF EKTIRYASRK AYAEVRPRIK GRFAKRTDSR VNDGGEVGVY GGFGVVPSF
101: ADVSMEAASW LLRNPSVKEG GVEIPNLFAD LDYSGVDPKM EASENSSGND GVVPVQTRAL FLSEDYFNFD ISASKTTFPH GFSCINQTVS STSLDVPLVP
201: EGGAVAEMSR TTAAPALQLS PAEREARVLR YREKRKNRKF EKTIRYASRK AYAEVRPRIK GRFAKRTDSR VNDGGEVGVY GGFGVVPSF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.