Factsheet for Bra029666.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35952	Canola	nucleus	94.82	99.19
CDY28029	Canola	nucleus	93.26	96.77
Bra001264.1-P	Field mustard	nucleus	82.9	91.17
Bra040020.1-P	Field mustard	nucleus	84.72	89.34
AT3G07650.1	Thale cress	nucleus	84.2	87.37
Bra020709.1-P	Field mustard	nucleus	65.8	72.36
Bra037499.1-P	Field mustard	nucleus	59.33	66.38
KRH72628	Soybean	nucleus	61.92	59.01
KRH17709	Soybean	nucleus	62.44	58.92
KRG89998	Soybean	nucleus	61.66	58.19
KRH16989	Soybean	nucleus	61.66	57.91
VIT_12s0057g01350.t01	Wine grape	nucleus	60.36	56.14
PGSC0003DMT400074143	Potato	nucleus	56.74	53.68
VIT_00s0194g00070.t01	Wine grape	nucleus	56.74	52.9
Os02t0724000-01	Rice	nucleus	53.89	51.11
Os06t0298200-01	Rice	nucleus	53.89	50.98
KXG19836	Sorghum	nucleus	54.15	50.85
TraesCS7A01G218600.1	Wheat	nucleus	52.07	50.76
TraesCS7D01G220300.1	Wheat	nucleus	52.07	50.76
Solyc05g020020.2.1	Tomato	nucleus	53.63	50.49
PGSC0003DMT400044878	Potato	nucleus	53.63	50.37
TraesCS6A01G286400.3	Wheat	nucleus	50.52	50.0
PGSC0003DMT400013624	Potato	nucleus	53.37	49.88
Solyc07g045180.2.1	Tomato	nucleus	53.89	49.76
HORVU6Hr1G071950.2	Barley	nucleus	48.96	49.48
TraesCS6D01G267100.1	Wheat	nucleus	50.0	49.23
TraesCS6B01G315400.1	Wheat	nucleus	49.22	48.72
Solyc12g006240.1.1	Tomato	nucleus	33.16	47.58
EES07342	Sorghum	nucleus	50.0	47.54
Zm00001d051684_P007	Maize	nucleus	50.0	47.54
Zm00001d045804_P003	Maize	nucleus	53.37	47.25
GSMUA_Achr3P04260_001	Banana	nucleus	51.3	47.14
GSMUA_Achr9P12860_001	Banana	nucleus	50.78	47.0
GSMUA_Achr7P20150_001	Banana	nucleus	49.74	46.6
GSMUA_Achr10P...	Banana	nucleus	48.19	46.38
GSMUA_Achr5P22460_001	Banana	nucleus	46.63	46.04
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	40.16	45.99
GSMUA_Achr5P04270_001	Banana	nucleus	48.96	44.79
Zm00001d017885_P001	Maize	nucleus	44.04	36.88
Bra023858.1-P	Field mustard	nucleus	29.79	29.79
Bra030070.1-P	Field mustard	nucleus	22.8	28.57
Bra032061.1-P	Field mustard	nucleus	19.69	26.3
Bra023541.1-P	Field mustard	nucleus	20.47	25.08
Bra020425.1-P	Field mustard	nucleus, plastid	21.5	24.27
Bra041077.1-P	Field mustard	nucleus	25.13	23.77
Bra010908.1-P	Field mustard	nucleus	25.39	23.45
Bra008668.1-P	Field mustard	nucleus	20.47	23.44
Bra036528.1-P	Field mustard	nucleus	20.73	23.19
Bra008669.1-P	Field mustard	nucleus	21.24	22.4
Bra004423.1-P	Field mustard	nucleus	19.17	22.16
Bra002709.1-P	Field mustard	nucleus	12.44	22.02
Bra009805.1-P	Field mustard	nucleus	19.95	21.94
Bra021464.1-P	Field mustard	nucleus	18.13	21.81
Bra001043.1-P	Field mustard	nucleus	10.1	17.11

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra029666	EnsemblPlants:Bra029666.1	EnsemblPlants:Bra029666.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4ELJ8	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002547ED4	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

AT3G07650 (E=1e-160) COL9 | COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding

Coordinates

chrA05:-:22735489..22737082

Molecular Weight (calculated)

42425.4 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.777

Length

386 amino acids

Sequence
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNSQPATVRC VEERVSLCQN CDWSSHNNNN NSSSSCKNCD WFSHNNNNNS
101: SSSSNNHKRQ TISCYSGCPS SSELASIWSF CLDLAGQSGC EQEMGLMNID DDGQNNQNCN EEKKDVAGSS SRPETSSAAP ATSSFPKDVR VCEDDFYGNL
201: GMDEVDLALE NYEELFGTAF NTSGELFGQG GIDSLFQKHH QAAAPEGGNL VQPAESNDDS FMSSKTEPII CFTSKPAHSN ISFSGVTGDS SAGDFQECGA
301: SSSMQLSGEP PWYPQTSQDN NASSHSVTRN NAVMRYKEKK KARKFDKTVR YASRKARADV RRRVKGRFVK AGEAYDYDPL TPTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.