Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0854800-03 | |
| Os10t0577800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | Os03t0854800-03 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | Os10t0577800-01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19836 | Sorghum | nucleus | 88.48 | 87.83 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 79.41 | 81.82 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 79.17 | 81.57 |
| Zm00001d045804_P003 | Maize | nucleus | 87.01 | 81.42 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 65.93 | 79.82 |
| Os02t0724000-01 | Rice | nucleus | 76.72 | 76.9 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 59.8 | 59.22 |
| GSMUA_Achr10P... | Banana | nucleus | 57.84 | 58.85 |
| Bra001264.1-P | Field mustard | nucleus | 49.75 | 57.83 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 58.58 | 57.59 |
| CDY07979 | Canola | nucleus | 49.51 | 57.39 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 58.09 | 57.25 |
| AT3G07650.1 | Thale cress | nucleus | 51.96 | 56.99 |
| CDY35952 | Canola | nucleus | 50.98 | 56.37 |
| CDY28029 | Canola | nucleus | 50.98 | 55.91 |
| KRG89998 | Soybean | nucleus | 55.88 | 55.75 |
| Bra040020.1-P | Field mustard | nucleus | 49.75 | 55.46 |
| KRH17709 | Soybean | nucleus | 55.39 | 55.26 |
| CDY22125 | Canola | nucleus | 49.26 | 54.92 |
| KRH72628 | Soybean | nucleus | 54.41 | 54.81 |
| CDX85321 | Canola | nucleus | 47.79 | 54.32 |
| KRH16989 | Soybean | nucleus | 54.66 | 54.26 |
| AT5G48250.1 | Thale cress | nucleus | 49.26 | 53.89 |
| Bra029666.1-P | Field mustard | nucleus | 50.98 | 53.89 |
| CDY48743 | Canola | nucleus | 45.83 | 53.43 |
| CDX86318 | Canola | nucleus | 46.81 | 53.35 |
| Bra020709.1-P | Field mustard | nucleus | 45.59 | 52.99 |
| CDY05691 | Canola | nucleus | 44.61 | 52.45 |
| CDX74034 | Canola | nucleus | 50.0 | 52.31 |
| Bra037499.1-P | Field mustard | nucleus | 44.12 | 52.17 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 49.75 | 51.92 |
| PGSC0003DMT400013624 | Potato | nucleus | 52.21 | 51.57 |
| PGSC0003DMT400074143 | Potato | nucleus | 50.98 | 50.98 |
| Solyc05g020020.2.1 | Tomato | nucleus | 50.98 | 50.73 |
| PGSC0003DMT400044878 | Potato | nucleus | 50.0 | 49.63 |
| Solyc07g045180.2.1 | Tomato | nucleus | 50.49 | 49.28 |
| Solyc12g006240.1.1 | Tomato | nucleus | 29.41 | 44.61 |
| Os06t0654900-01 | Rice | nucleus | 7.11 | 35.8 |
| Os02t0610500-01 | Rice | nucleus | 19.61 | 24.1 |
| Os04t0497700-01 | Rice | nucleus | 19.36 | 23.72 |
| Os07t0667300-01 | Rice | nucleus | 21.81 | 23.42 |
| Os03t0351100-01 | Rice | nucleus | 21.57 | 21.84 |
| Os09t0509700-01 | Rice | nucleus | 23.04 | 21.81 |
| Os06t0275000-01 | Rice | mitochondrion | 20.1 | 20.76 |
| Os08t0536300-01 | Rice | nucleus | 24.26 | 20.29 |
| Os02t0178100-01 | Rice | nucleus | 16.42 | 20.24 |
| Os09t0240200-01 | Rice | nucleus | 14.46 | 17.61 |
| Os08t0249000-01 | Rice | nucleus | 4.41 | 10.0 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:4340812 | EMBL:AK098865 | UniProt:B7EN35 | ProteinID:BAS97360.1 | InterPro:CCT_domain |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlantsGene:Os06g0298200 | EnsemblPlants:Os06t0298200-01 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF6 |
| SMART:SM00336 | UniParc:UPI000188AE37 | RefSeq:XP_015644311.1 | InterPro:Znf_B-box | SEG:seg | : |
Description
B-box-containing protein 19, Days to heading on chromosome 2, CCT domain-containing gene 22, CCT (CO, CO-LIKE and TOC1) domain protein 22, CCT domain protein 22Similar to CCT motif family protein. (Os06t0298200-01);Similar to Oryza sativa (indica cultivar-group) Hd1. (Os06t0298200-02)
Coordinates
chr6:-:11070178..11076691
Molecular Weight (calculated)
43938.1 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.448
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS
101: ELSKIWTFVS DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL PLATDQMAGS VDSTSAKVPY
201: TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKG DSSLCIPVRQ
301: ARSSISLSFS GLTGESSAGD YQDCGVSPVL LMGEPPWHPP GPEGSFAGAT RDDAITRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD
401: PLCETRSY
101: ELSKIWTFVS DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL PLATDQMAGS VDSTSAKVPY
201: TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKG DSSLCIPVRQ
301: ARSSISLSFS GLTGESSAGD YQDCGVSPVL LMGEPPWHPP GPEGSFAGAT RDDAITRYKE KKKRRKFDKK IRYASRKARA DVRKRVKGRF VKAGEAYDYD
401: PLCETRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.