CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90487
KXG38822

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	EER90487	AT1G32230.1	19548978
AT5G48250.1	KXG38822	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045804_P003	Maize	nucleus	94.16	88.76
Os06t0298200-01	Rice	nucleus	87.83	88.48
TraesCS7A01G218600.1	Wheat	nucleus	77.86	80.81
TraesCS7D01G220300.1	Wheat	nucleus	77.37	80.3
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	64.48	78.64
EES07342	Sorghum	nucleus	73.72	74.63
GSMUA_Achr7P20150_001	Banana	nucleus	58.88	58.74
VIT_00s0194g00070.t01	Wine grape	nucleus	58.88	58.45
GSMUA_Achr10P...	Banana	nucleus	56.45	57.86
Bra001264.1-P	Field mustard	nucleus	49.15	57.55
CDY07979	Canola	nucleus	48.91	57.1
AT3G07650.1	Thale cress	nucleus	51.58	56.99
CDY35952	Canola	nucleus	50.85	56.64
Bra040020.1-P	Field mustard	nucleus	50.12	56.28
CDY28029	Canola	nucleus	50.85	56.18
VIT_12s0057g01350.t01	Wine grape	nucleus	56.2	55.66
KRH17709	Soybean	nucleus	55.23	55.5
KRG89998	Soybean	nucleus	55.23	55.5
CDY22125	Canola	nucleus	49.15	55.19
KRH72628	Soybean	nucleus	54.26	55.06
AT5G48250.1	Thale cress	nucleus	49.39	54.42
CDX85321	Canola	nucleus	47.45	54.32
KRH16989	Soybean	nucleus	54.26	54.26
Bra029666.1-P	Field mustard	nucleus	50.85	54.15
CDY48743	Canola	nucleus	45.74	53.71
CDX86318	Canola	nucleus	46.47	53.35
Bra020709.1-P	Field mustard	nucleus	45.5	53.28
CDY05691	Canola	nucleus	44.53	52.74
GSMUA_Achr5P22460_001	Banana	nucleus	50.12	52.69
CDX74034	Canola	nucleus	49.88	52.56
Bra037499.1-P	Field mustard	nucleus	43.8	52.17
PGSC0003DMT400013624	Potato	nucleus	51.09	50.85
PGSC0003DMT400074143	Potato	nucleus	50.12	50.49
Solyc05g020020.2.1	Tomato	nucleus	50.37	50.49
PGSC0003DMT400044878	Potato	nucleus	49.39	49.39
Solyc07g045180.2.1	Tomato	nucleus	49.88	49.04
Solyc12g006240.1.1	Tomato	nucleus	29.2	44.61
EES12446	Sorghum	nucleus	19.95	24.92
EES05406	Sorghum	nucleus	18.73	22.92
EES14176	Sorghum	nucleus	26.03	21.84
OQU85473	Sorghum	nucleus	18.98	21.31
EER88227	Sorghum	nucleus	21.17	21.17
EER94860	Sorghum	nucleus	20.92	20.82
EER99873	Sorghum	nucleus	20.68	20.58
EES14798	Sorghum	nucleus	13.87	19.52
EER90145	Sorghum	nucleus	17.52	19.15
OQU84486	Sorghum	nucleus	17.52	18.46

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8072813	UniProt:A0A194YJQ9	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KXG19836	ProteinID:KXG19836	ProteinID:KXG19836.1	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	SMART:SM00336	EnsemblPlantsGene:SORBI_3010G123500
UniParc:UPI0007F2A6AA	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:14532993..14535821

Molecular Weight (calculated)

44241.4 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.466

Length

411 amino acids

Sequence
(BLAST)

001: MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA
101: ELSRIWSFVS DIPNVAPEPN CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL ATDQTAGSVD SPPDKDSCVQ
201: VPYTPDKDMF SKDSIYEDFC VDDVDLAFEN YEELFGTSHI QTEQLFDDAG IDSYFEVKEA PAGNSTEQSK LKQPANSNAV SADSGMSNPG VKGDSSVCIP
301: LRQARSSLSL SFSGLTGESS AGDHQDCVVS SLLLMGEPPW QPPGPEGSIA GGSRDSAITR YKEKKKRRKF DKKIRYASRK ARADVRKRVK GRFVKVGEAY
401: DYDPLCQTRS Y

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.