CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90487
KXG38822

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	EER90487	AT1G32230.1	19548978
AT5G48250.1	KXG38822	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051684_P007	Maize	nucleus	90.89	90.89
Os02t0724000-01	Rice	nucleus	78.08	77.89
Zm00001d017885_P001	Maize	nucleus	85.47	75.27
KXG19836	Sorghum	nucleus	74.63	73.72
HORVU6Hr1G071950.2	Barley	nucleus	69.21	73.56
TraesCS6B01G315400.1	Wheat	nucleus	70.2	73.08
TraesCS6A01G286400.3	Wheat	nucleus	68.97	71.79
TraesCS6D01G267100.1	Wheat	nucleus	68.97	71.43
GSMUA_Achr7P20150_001	Banana	nucleus	61.33	60.44
GSMUA_Achr10P...	Banana	nucleus	58.37	59.1
VIT_00s0194g00070.t01	Wine grape	nucleus	55.42	54.35
AT3G07650.1	Thale cress	nucleus	49.01	53.49
KRG89998	Soybean	nucleus	53.69	53.3
Bra001264.1-P	Field mustard	nucleus	45.81	52.99
KRH17709	Soybean	nucleus	53.2	52.81
GSMUA_Achr5P22460_001	Banana	nucleus	50.74	52.69
CDY07979	Canola	nucleus	45.57	52.56
VIT_12s0057g01350.t01	Wine grape	nucleus	53.69	52.53
KRH72628	Soybean	nucleus	52.22	52.35
CDY35952	Canola	nucleus	47.54	52.3
Bra040020.1-P	Field mustard	nucleus	47.04	52.19
AT5G48250.1	Thale cress	nucleus	47.78	52.01
CDY22125	Canola	nucleus	46.8	51.91
CDY28029	Canola	nucleus	47.29	51.61
KRH16989	Soybean	nucleus	52.22	51.58
CDX85321	Canola	nucleus	45.57	51.53
PGSC0003DMT400074143	Potato	nucleus	51.48	51.23
CDX86318	Canola	nucleus	45.07	51.12
CDY48743	Canola	nucleus	43.84	50.86
Bra020709.1-P	Field mustard	nucleus	43.84	50.71
Bra037499.1-P	Field mustard	nucleus	42.86	50.43
CDY05691	Canola	nucleus	43.1	50.43
Bra029666.1-P	Field mustard	nucleus	47.54	50.0
CDX74034	Canola	nucleus	46.06	47.95
PGSC0003DMT400013624	Potato	nucleus	48.52	47.7
Solyc05g020020.2.1	Tomato	nucleus	47.54	47.07
PGSC0003DMT400044878	Potato	nucleus	46.31	45.74
Solyc07g045180.2.1	Tomato	nucleus	46.8	45.45
Solyc12g006240.1.1	Tomato	nucleus	29.8	44.98
EES12446	Sorghum	nucleus	20.44	25.23
EES05406	Sorghum	nucleus	19.21	23.21
EER99873	Sorghum	nucleus	21.43	21.07
OQU85473	Sorghum	nucleus	18.23	20.22
EES14176	Sorghum	nucleus	24.38	20.2
EER88227	Sorghum	nucleus	20.2	19.95
EER94860	Sorghum	nucleus	19.95	19.61
EES14798	Sorghum	nucleus	14.04	19.52
OQU84486	Sorghum	nucleus	17.98	18.72
EER90145	Sorghum	nucleus	17.24	18.62

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8071759	UniProt:C5XZS4	InterPro:CCT_domain	EnsemblPlants:EES07342	ProteinID:EES07342
ProteinID:EES07342.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	SMART:SM00336
EnsemblPlantsGene:SORBI_3004G256200	unigene:Sbi.15107	UniParc:UPI0001A85B66	RefSeq:XP_002454366.1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:60208956..60213989

Molecular Weight (calculated)

44563.8 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.605

Length

406 amino acids

Sequence
(BLAST)

001: MASLCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPASVRC LEDNASLCQN CDWNGHDAAS GASGHKRQAI NCYSGCPSSA
101: ELSRIWSFIM DIPTVPAEPN CEDGLSMMTI DDSDVTNHHD ASDDKRLLEI ANTTLMSDPP SADKPKPLIS SSSGDGFDVL PLATDQPAGS VSVTPKVPYA
201: RDDDNFNDGM YEDLCVDDAD MTFENYEELF GTSHIRTEEL FDDAGIDSYF EMKETQPFDF NEEPKTMQLE CSNVVSADCG MLNPGARADS SLCIPVRQVR
301: SSISHSLSGL TGESSAGDHQ DCGVSPMLLM GEPPWHSPGP EGSVAGGSRD SALTRYKEKK KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL
401: SQTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.