CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90227
EER90398
EER92328
EER97754
EES02626
EES02651
EES07119
EES07342
EES07908
EES12431
EES17234
EES17917
KXG19836
KXG21735
KXG26157
KXG28945
KXG30289
KXG39897
OQU75583
OQU79740
OQU88149
OQU89451
OQU92150

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32230.1	EES07119	AT1G06040.1	11018516
AT1G32230.1	EES12431	AT1G06040.1	11018516
AT1G32230.1	EES07119	AT1G06040.1	19548978
AT1G32230.1	EES12431	AT1G06040.1	19548978
AT1G32230.1	OQU79740	AT2G01980.1	17023541
AT1G32230.1	EER90398	AT2G16770.1	19548978
AT1G32230.1	KXG26157	AT2G33550.1	19548978
AT1G32230.1	KXG30289	AT2G33550.1	19548978
AT1G32230.1	OQU88149	AT2G33550.1	19548978
AT1G32230.1	EES17234	AT2G37630.1	19548978
AT1G32230.1	EER92328	AT3G04060.1	19548978
AT1G32230.1	EER97754	AT3G04060.1	19548978
AT1G32230.1	EES02626	AT3G04060.1	19548978
AT1G32230.1	EES02651	AT3G04060.1	19548978
AT1G32230.1	EES07908	AT3G04060.1	19548978
AT1G32230.1	EES17917	AT3G04060.1	19548978
AT1G32230.1	KXG28945	AT3G04060.1	19548978
AT1G32230.1	OQU89451	AT3G04060.1	19548978
AT1G32230.1	EER92328	AT3G04060.1	25348421
AT1G32230.1	EER97754	AT3G04060.1	25348421
AT1G32230.1	EES02626	AT3G04060.1	25348421
AT1G32230.1	EES02651	AT3G04060.1	25348421
AT1G32230.1	EES07908	AT3G04060.1	25348421
AT1G32230.1	EES17917	AT3G04060.1	25348421
AT1G32230.1	KXG28945	AT3G04060.1	25348421
AT1G32230.1	OQU89451	AT3G04060.1	25348421
AT1G32230.1	KXG21735	AT3G11020.1	19548978
AT1G32230.1	OQU92150	AT4G00050.1	19548978
AT1G32230.1	KXG21735	AT5G05410.1	19548978
AT1G32230.1	EES07342	AT5G48250.1	19548978
AT1G32230.1	KXG19836	AT5G48250.1	19548978
AT1G32230.1	EER90227	AT5G61270.1	19548978
AT1G32230.1	KXG39897	AT5G61270.1	19548978
AT1G32230.1	OQU75583	AT5G61270.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012821_P003	Maize	extracellular, vacuole	78.71	68.75
HORVU5Hr1G124010.1	Barley	nucleus	53.4	52.85
TraesCS4A01G321300.1	Wheat	nucleus	51.66	52.02
TraesCS5B01G557500.2	Wheat	nucleus	52.36	51.9
Os03t0854800-03	Rice	nucleus	52.71	51.71
TraesCS5D01G551800.3	Wheat	nucleus	51.48	51.04
HORVU0Hr1G014460.1	Barley	nucleus	45.03	44.71
GSMUA_Achr11P...	Banana	nucleus	39.27	43.27
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	40.14	41.82
GSMUA_Achr5P14120_001	Banana	nucleus	39.09	39.58
GSMUA_Achr2P18060_001	Banana	nucleus	39.09	38.96
GSMUA_Achr4P19000_001	Banana	nucleus	28.45	38.9
KXG38822	Sorghum	nucleus	38.22	36.81
CDY60257	Canola	cytosol	17.28	30.28
Solyc08g005270.2.1	Tomato	nucleus	30.72	29.33
VIT_02s0012g01920.t01	Wine grape	cytosol	26.88	28.89
Bra023252.1-P	Field mustard	nucleus	23.56	28.01
VIT_02s0012g01930.t01	Wine grape	nucleus	29.84	27.45
PGSC0003DMT400038368	Potato	nucleus	28.1	27.33
CDY67026	Canola	nucleus	26.18	27.27
CDY22597	Canola	nucleus	25.65	27.02
PGSC0003DMT400043197	Potato	nucleus	27.92	26.94
CDY32124	Canola	nucleus	24.78	26.79
Bra017317.1-P	Field mustard	nucleus	24.78	26.79
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	24.43	26.72
Bra035511.1-P	Field mustard	cytosol	25.65	26.34
CDY31694	Canola	nucleus	24.26	26.33
Solyc08g076420.2.1	Tomato	nucleus	27.4	26.3
KRH39574	Soybean	mitochondrion, nucleus, plastid	26.7	26.24
KRH74370	Soybean	mitochondrion, nucleus, plastid	26.53	26.07
AT1G32230.1	Thale cress	nucleus	26.7	25.98
CDY43007	Canola	nucleus	26.18	25.82
Solyc06g066330.2.1	Tomato	nucleus	26.7	25.76
CDX84199	Canola	cytosol, nucleus, plastid	21.82	25.36
CDY41739	Canola	cytosol	23.39	24.36
AT2G35510.3	Thale cress	cytosol	24.08	24.3
EER92605	Sorghum	nucleus	18.67	23.83
KRH74373	Soybean	mitochondrion	16.4	19.71
EES15499	Sorghum	nucleus	22.16	14.05

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	EntrezGene:8061389	UniProt:C5WRZ3	EnsemblPlants:EER90487	ProteinID:EER90487
ProteinID:EER90487.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317
ProteinID:OQU90598.1	PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4	InterPro:Poly(ADP-ribose)pol_cat_dom
InterPro:RST	EnsemblPlantsGene:SORBI_3001G006700	SUPFAM:SSF56399	unigene:Sbi.15032	UniParc:UPI0001A82467	RefSeq:XP_002463489.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:684665..690615

Molecular Weight (calculated)

64126.5 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.433

Length

573 amino acids

Sequence
(BLAST)

001: MEQRNVLALG EHVLKATIRK RKHETAMEHP EGNDVMVFSQ HDPRKHPATF DDRANCKKSK LISCGSGSIL ESYRNFKTSG LPVRVLFYQH GDWSDFPEDV
101: VNLAQQDFQL KRPITTAVFQ NKHIMLDFVH MICIDYEMTI DKPLAWVDDH GKHFFPDLSA GLYTSKPSQH EKGEADECDG VSSVAESSSS VSVGEVVSHS
201: KRISNIAEDN LKAHNRLYEA VGENNSGPSF HLNEYFSGTI QATGKPNNGP RVDSAVQNLL LKGLGQPFSE KDIIAIYRTP LLDQQWQVRC GLFQKEVEET
301: RSRRGNANVR YAWLPCSRYT MEQMTTRGAL ETAKPKKGSM FGVGTCLAPA NCSNSCARYS EFQEDGIIRM MLCRVIMGNV EVVLPGSKQF QPSNESFDNG
401: VDDLQNPQNY IIWDSNVHKH IFAEYAVIVK VPPVTNGCLV LKDSVPNISE IISTGSPDNL TKEDRFQTLA PSGVEQEAPK LGHAPRAPSS PWMPFSMLFA
501: AISTKVPRSD MDLVIRYYEE FKRKGISRSD LVIRIRQIVG DKILVSTIMR LHQKSPQVAA AGLPRALARG KRE

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.