Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | EER90487 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | KXG38822 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0397500-00 | Rice | cytosol, nucleus | 15.28 | 84.62 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 71.67 | 77.25 |
| Zm00001d003889_P001 | Maize | nucleus | 70.83 | 73.07 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 58.61 | 62.24 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 59.72 | 61.78 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 59.72 | 61.43 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 55.56 | 58.31 |
| KXG30289 | Sorghum | plastid | 45.56 | 46.99 |
| CDX85279 | Canola | cytosol | 31.11 | 46.28 |
| KRG93139 | Soybean | nucleus | 38.06 | 42.95 |
| CDY27959 | Canola | cytosol | 37.22 | 42.27 |
| Bra005486.1-P | Field mustard | nucleus | 37.22 | 42.14 |
| CDY17185 | Canola | cytosol | 37.22 | 42.14 |
| AT2G33550.1 | Thale cress | cytosol | 36.67 | 42.04 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 37.22 | 41.88 |
| KRH36366 | Soybean | nucleus | 37.78 | 41.85 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 39.17 | 41.47 |
| Bra021860.1-P | Field mustard | nucleus | 35.56 | 40.0 |
| Solyc04g045430.2.1 | Tomato | nucleus | 34.72 | 39.94 |
| CDY37710 | Canola | cytosol | 35.28 | 39.81 |
| CDY23727 | Canola | cytosol | 34.44 | 39.62 |
| KRH45200 | Soybean | nucleus | 35.56 | 39.26 |
| KRH01509 | Soybean | nucleus | 35.56 | 38.91 |
| PGSC0003DMT400087793 | Potato | nucleus | 32.5 | 37.99 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 35.56 | 37.76 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 11.11 | 37.74 |
| PGSC0003DMT400087461 | Potato | nucleus | 30.83 | 36.04 |
| Solyc01g065890.1.1 | Tomato | cytosol | 11.67 | 35.29 |
| OQU88149 | Sorghum | nucleus | 29.17 | 35.0 |
| PGSC0003DMT400036757 | Potato | nucleus | 29.17 | 32.61 |
| Solyc01g065900.1.1 | Tomato | nucleus | 25.28 | 31.6 |
| PGSC0003DMT400087902 | Potato | nucleus | 21.94 | 31.23 |
| Solyc03g118230.1.1 | Tomato | nucleus | 28.33 | 30.63 |
| KRH59736 | Soybean | nucleus | 26.39 | 25.47 |
| KRH41057 | Soybean | nucleus | 23.33 | 25.3 |
| KXG27398 | Sorghum | plastid | 20.28 | 18.86 |
| EER93695 | Sorghum | nucleus | 16.94 | 16.94 |
Protein Annotations
| EnsemblPlants:KXG26157 | EnsemblPlantsGene:SORBI_3006G058400 | EntrezGene:8072029 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR33492 | PANTHER:PTHR33492:SF1 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:KXG26157 |
| ProteinID:KXG26157.1 | SEG:seg | UniParc:UPI00081AE969 | UniProt:A0A1B6PKF9 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr6:-:40463466..40466199
Molecular Weight (calculated)
39072.3 Da
IEP (calculated)
5.453
GRAVY (calculated)
-0.833
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAGGEGSR GVGTGRGSRL PRWTRQEILV LIEGKRVVER SGRGRGRGRV RGGGGGDGGA EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE
101: WERGYAARKE ASFWAMRNDA RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR RGVQGSGLFS SSEDEDDQDD
201: DAATPSPTPT PTPTPAPAAA VAVPIPGEQA VPFFLDEMAR ASSISVHVTE KTTDVPRQAS SEQAGTSKEK QPEQITEDSP AQCGQKRQRS DDNASGRATT
301: NLQGQLVEIL DRSSQMVAAQ LEAQNINSRL DREQRKDQVS SLLGVLGKVA DALYRIADKL
101: WERGYAARKE ASFWAMRNDA RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR RGVQGSGLFS SSEDEDDQDD
201: DAATPSPTPT PTPTPAPAAA VAVPIPGEQA VPFFLDEMAR ASSISVHVTE KTTDVPRQAS SEQAGTSKEK QPEQITEDSP AQCGQKRQRS DDNASGRATT
301: NLQGQLVEIL DRSSQMVAAQ LEAQNINSRL DREQRKDQVS SLLGVLGKVA DALYRIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.