Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0854800-03 | |
| Os10t0577800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | Os03t0854800-03 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | Os10t0577800-01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G287600.2 | Wheat | nucleus | 89.23 | 17.11 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 89.23 | 16.67 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 87.69 | 16.62 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 89.23 | 16.57 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 80.0 | 15.57 |
| Zm00001d003889_P001 | Maize | nucleus | 83.08 | 15.47 |
| KXG26157 | Sorghum | nucleus | 84.62 | 15.28 |
| CDX85279 | Canola | cytosol | 55.38 | 14.88 |
| KRH36366 | Soybean | nucleus | 63.08 | 12.62 |
| KRG93139 | Soybean | nucleus | 61.54 | 12.54 |
| AT2G33550.1 | Thale cress | cytosol | 58.46 | 12.1 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 63.08 | 12.06 |
| CDY27959 | Canola | cytosol | 55.38 | 11.36 |
| Bra005486.1-P | Field mustard | nucleus | 55.38 | 11.32 |
| CDY17185 | Canola | cytosol | 55.38 | 11.32 |
| CDY23727 | Canola | cytosol | 52.31 | 10.86 |
| PGSC0003DMT400087461 | Potato | nucleus | 50.77 | 10.71 |
| CDY37710 | Canola | cytosol | 52.31 | 10.66 |
| KRH01509 | Soybean | nucleus | 53.85 | 10.64 |
| Bra021860.1-P | Field mustard | nucleus | 52.31 | 10.62 |
| Solyc04g045430.2.1 | Tomato | nucleus | 50.77 | 10.54 |
| KRH45200 | Soybean | nucleus | 52.31 | 10.43 |
| PGSC0003DMT400087793 | Potato | nucleus | 49.23 | 10.39 |
| Solyc01g065900.1.1 | Tomato | nucleus | 43.08 | 9.72 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 49.23 | 9.44 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 46.15 | 9.38 |
| PGSC0003DMT400036757 | Potato | nucleus | 44.62 | 9.01 |
| Solyc03g118230.1.1 | Tomato | nucleus | 41.54 | 8.11 |
| KRH59736 | Soybean | nucleus | 41.54 | 7.24 |
| KRH41057 | Soybean | nucleus | 35.38 | 6.93 |
| Os04t0670900-00 | Rice | nucleus | 15.38 | 2.56 |
| Os03t0666300-00 | Rice | nucleus | 13.85 | 2.3 |
| PGSC0003DMT400087902 | Potato | nucleus | 7.69 | 1.98 |
| Solyc01g065890.1.1 | Tomato | cytosol | 3.08 | 1.68 |
| Os02t0516800-00 | Rice | nucleus | 10.77 | 1.57 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 1.54 | 0.94 |
Protein Annotations
| EnsemblPlants:Os04t0397500-00 | EnsemblPlantsGene:Os04g0397500 | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | ProteinID:BAS89014.1 |
| UniParc:UPI0003938B5D | UniProt:A0A0P0W9R9 | MapMan:35.2 | : | : | : |
Description
Similar to gt-2-related. (Os04t0397500-00)
Coordinates
chr4:-:19612844..19613317
Molecular Weight (calculated)
7170.6 Da
IEP (calculated)
4.613
GRAVY (calculated)
-0.328
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: SGEAPDLQGQ LIEILDRSSR MVAAQLEAQN INCQLDREQR KDQVSSLLGV LGKVADALYR IADKM
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.