Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33550.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G33550.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85279 | Canola | cytosol | 74.45 | 97.52 |
| CDY17185 | Canola | cytosol | 95.58 | 95.28 |
| AT2G33550.1 | Thale cress | cytosol | 64.04 | 64.65 |
| CDY37710 | Canola | cytosol | 63.72 | 63.32 |
| CDY23727 | Canola | cytosol | 62.15 | 62.94 |
| Os04t0397500-00 | Rice | cytosol, nucleus | 11.36 | 55.38 |
| GSMUA_Achr10P... | Banana | nucleus | 45.43 | 42.35 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 44.8 | 41.89 |
| KXG30289 | Sorghum | plastid | 44.48 | 40.4 |
| HORVU2Hr1G071100.8 | Barley | cytosol | 43.53 | 40.23 |
| TraesCS2B01G304400.1 | Wheat | nucleus | 43.85 | 39.94 |
| TraesCS2A01G287600.2 | Wheat | nucleus | 42.59 | 39.82 |
| TraesCS2D01G286000.2 | Wheat | nucleus | 42.59 | 38.57 |
| Zm00001d016604_P001 | Maize | plastid | 44.16 | 38.25 |
| Zm00001d025275_P001 | Maize | mitochondrion, nucleus | 39.75 | 37.72 |
| KXG26157 | Sorghum | nucleus | 42.27 | 37.22 |
| Zm00001d003889_P001 | Maize | nucleus | 40.69 | 36.96 |
| TraesCS5A01G443100.1 | Wheat | plastid | 40.69 | 35.93 |
| TraesCS5D01G450500.1 | Wheat | plastid | 40.38 | 35.56 |
| Zm00001d050583_P001 | Maize | plastid | 41.01 | 35.23 |
| HORVU5Hr1G106480.1 | Barley | cytosol, nucleus | 34.38 | 35.16 |
| Zm00001d042271_P001 | Maize | nucleus, plastid | 30.6 | 35.02 |
| TraesCS5B01G447700.1 | Wheat | plastid | 40.06 | 34.89 |
| PGSC0003DMT400036757 | Potato | nucleus | 35.02 | 34.47 |
| OQU88149 | Sorghum | nucleus | 32.18 | 34.0 |
| TraesCS3D01G434100.1 | Wheat | nucleus | 31.23 | 33.9 |
| TraesCS3A01G441300.1 | Wheat | nucleus | 31.55 | 33.67 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 33.75 | 33.44 |
| Solyc03g118230.1.1 | Tomato | nucleus | 34.7 | 33.03 |
| HORVU3Hr1G096240.1 | Barley | nucleus | 30.91 | 32.89 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 22.08 | 31.39 |
| KRH41057 | Soybean | nucleus | 32.49 | 31.02 |
| KRH59736 | Soybean | nucleus | 32.81 | 27.88 |
| TraesCS3B01G475300.1 | Wheat | nucleus, plastid | 24.29 | 25.5 |
| Os02t0516800-00 | Rice | nucleus | 30.28 | 21.52 |
| CDX98246 | Canola | nucleus | 20.5 | 17.62 |
| CDY02375 | Canola | nucleus | 19.56 | 17.03 |
| CDY49546 | Canola | nucleus | 19.56 | 16.76 |
| CDX77554 | Canola | nucleus | 20.19 | 16.58 |
Protein Annotations
| EnsemblPlants:CDY27959 | EnsemblPlantsGene:GSBRNA2T00038880001 | Gene3D:1.10.10.60 | GO:A0A078GS12 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF51 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY27959 |
| ProteinID:CDY27959.1 | SEG:seg | UniParc:UPI0004EDBC27 | UniProt:A0A078GS12 | MapMan:35.1 | : |
Description
BnaCnng05440DBnaCnng05440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS12]
Coordinates
chrLK032212:+:529034..530695
Molecular Weight (calculated)
34602.7 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.743
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEPLGLGV NVVDGDGNVN GGGENNNTTT TPSNEGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCRLHGVN
101: RGPVQCRKRW SNLAGDYKKI KEWESQVKEE AESYWVMRND VRRERKLPGF FDKEVYDIVD GGVVPPANPV LALGLAPAST SAEEPARSVE KLSSASAPKS
201: LIDVIDKEKQ AACEAADQGG MKEKHPEAAN PEAASTSQEE RKRKRTSSGD EEGEATKSRQ DQLIEILERN GQLLAAQLEV QNTNLKLDRE QRKDHGDNLV
301: AVLNKLADAV AKIADKL
101: RGPVQCRKRW SNLAGDYKKI KEWESQVKEE AESYWVMRND VRRERKLPGF FDKEVYDIVD GGVVPPANPV LALGLAPAST SAEEPARSVE KLSSASAPKS
201: LIDVIDKEKQ AACEAADQGG MKEKHPEAAN PEAASTSQEE RKRKRTSSGD EEGEATKSRQ DQLIEILERN GQLLAAQLEV QNTNLKLDRE QRKDHGDNLV
301: AVLNKLADAV AKIADKL
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
Arabidopsis Description
ASR3Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.