CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014906.1-P	Field mustard	nucleus	100.0	100.0
CDX98246	Canola	nucleus	70.21	73.44
CDY49546	Canola	nucleus	68.91	71.89
CDY02375	Canola	nucleus	66.06	70.05
AT1G31310.1	Thale cress	nucleus	60.88	61.36
PGSC0003DMT400033627	Potato	nucleus	39.9	45.56
Solyc02g030460.2.1	Tomato	nucleus	39.38	44.97
Solyc02g069390.1.1	Tomato	nucleus	34.97	44.12
GSMUA_Achr5P02140_001	Banana	nucleus	31.61	39.1
GSMUA_Achr4P32040_001	Banana	nucleus	33.94	38.42
Zm00001d034953_P001	Maize	nucleus	19.95	37.75
VIT_10s0042g00940.t01	Wine grape	cytosol	27.98	36.86
PGSC0003DMT400054486	Potato	nucleus	11.4	34.11
TraesCS4A01G294700.2	Wheat	nucleus	28.24	33.03
HORVU4Hr1G002970.1	Barley	nucleus	27.46	31.83
TraesCS4D01G017200.2	Wheat	nucleus	26.94	31.52
TraesCS4B01G019200.1	Wheat	nucleus	26.68	31.12
EER93695	Sorghum	nucleus	27.98	30.0
Zm00001d013588_P001	Maize	nucleus	27.46	29.44
Os03t0666300-00	Rice	nucleus	22.8	22.51
CDX85279	Canola	cytosol	13.47	21.49
CDY27959	Canola	cytosol	16.58	20.19
CDY17185	Canola	cytosol	16.32	19.81
CDY23727	Canola	cytosol	15.29	18.85
CDY37710	Canola	cytosol	15.54	18.81

Protein Annotations

EnsemblPlants:CDX77554	EnsemblPlantsGene:GSBRNA2T00128453001	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX77554	ProteinID:CDX77554.1	SEG:seg
UniParc:UPI0002540EDB	MapMan:35.2	:	:	:	:

Description

BnaA07g06920D

Coordinates

chrLK031811:+:1746521..1748573

Molecular Weight (calculated)

42330.8 Da

IEP (calculated)

9.538

GRAVY (calculated)

-0.833

Length

386 amino acids

Sequence
(BLAST)

001: MADQSGGLGL MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV
101: REYERGRLES SFASGSSSSA AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFNVVESKT HPSSTAATAI TAAVAAAAAE TGSGNGSGGG LHIPKVIQQQ
201: GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRPLLLPPP PQPSFHAQPI LPTKDSSSDS DTNEHSDTSP AKRRRTMPTT AAGTSGGGGG GNAEMEEGES
301: VVAAALSRSA SVIANAIRES EERQDRRHKE VMSLKERRLK IEETNVEMNR EGMSGLVEAI NKLANSMFAL ASSTSRHNNQ HQGGPS

Best Arabidopsis Sequence Match ( AT1G31310.1 )
(BLAST)

001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.