Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033627 | Potato | nucleus | 76.33 | 76.33 |
| Solyc02g069390.1.1 | Tomato | nucleus | 47.34 | 52.29 |
| CDY02375 | Canola | nucleus | 44.67 | 41.48 |
| CDX98246 | Canola | nucleus | 44.08 | 40.38 |
| CDY49546 | Canola | nucleus | 44.08 | 40.27 |
| AT1G31310.1 | Thale cress | nucleus | 44.97 | 39.69 |
| Bra014906.1-P | Field mustard | nucleus | 44.97 | 39.38 |
| CDX77554 | Canola | nucleus | 44.97 | 39.38 |
| Bra023175.1-P | Field mustard | nucleus | 44.67 | 39.02 |
| AT2G35640.1 | Thale cress | nucleus | 39.05 | 38.82 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 31.07 | 35.84 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 36.09 | 35.78 |
| Zm00001d034953_P001 | Maize | nucleus | 21.3 | 35.29 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 32.54 | 35.26 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 29.59 | 30.3 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 29.59 | 30.03 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 28.7 | 29.39 |
| Zm00001d013588_P001 | Maize | nucleus | 31.07 | 29.17 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 28.4 | 29.0 |
| EER93695 | Sorghum | nucleus | 29.88 | 28.06 |
| Solyc01g065890.1.1 | Tomato | cytosol | 9.17 | 26.05 |
| Os03t0666300-00 | Rice | nucleus | 25.15 | 21.74 |
| Solyc09g015150.1.1 | Tomato | nucleus, plastid | 6.51 | 20.75 |
| Solyc04g045430.2.1 | Tomato | nucleus | 17.75 | 19.17 |
| Solyc03g118230.1.1 | Tomato | nucleus | 17.16 | 17.42 |
| Solyc01g065900.1.1 | Tomato | nucleus | 12.72 | 14.93 |
Protein Annotations
| EnsemblPlants:Solyc02g030460.2.1 | EnsemblPlantsGene:Solyc02g030460.2 | InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR33492 | PANTHER:PTHR33492:SF2 |
| PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI0002768DC3 | UniProt:K4B595 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:-:25936789..25939037
Molecular Weight (calculated)
38514.8 Da
IEP (calculated)
9.546
GRAVY (calculated)
-0.969
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSMLRD YRKGNWTIQE TMVLIEAKKM DDERRMKRQG GDIGNSSSSE RGNINKPGEL RWKWVEDYCW RHGCLRSQNQ CNDKWDNLMR DFKKVREYER
101: RVSEKLLLAQ GNDDENVIKS YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKMLVG SSFNPTTTSM SPTLQQLQIA TFPLPLPPPP QLLPPRPPLV
201: QPPPPNIPPT QPLPTMCDSS DHDKSEHSDS PAKRRRKGKG GEASGTSGDH HNINNLQEVG SAIFRSATII AKTIKASEEG EDRRHNEMLK LHERRLQIEE
301: SKAEINRQGI NGLVDSINRL ANSILSLASN NNQPPPPK
101: RVSEKLLLAQ GNDDENVIKS YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKMLVG SSFNPTTTSM SPTLQQLQIA TFPLPLPPPP QLLPPRPPLV
201: QPPPPNIPPT QPLPTMCDSS DHDKSEHSDS PAKRRRKGKG GEASGTSGDH HNINNLQEVG SAIFRSATII AKTIKASEEG EDRRHNEMLK LHERRLQIEE
301: SKAEINRQGI NGLVDSINRL ANSILSLASN NNQPPPPK
001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.