Factsheet for Bra023175.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02375	Canola	nucleus	75.45	80.22
CDY49546	Canola	nucleus	63.31	66.22
Bra014906.1-P	Field mustard	nucleus	64.86	65.03
AT1G31310.1	Thale cress	nucleus	57.88	58.49
Solyc02g030460.2.1	Tomato	nucleus	39.02	44.67
PGSC0003DMT400033627	Potato	nucleus	38.76	44.38
Solyc02g069390.1.1	Tomato	nucleus	34.11	43.14
Zm00001d034953_P001	Maize	nucleus	20.41	38.73
GSMUA_Achr5P02140_001	Banana	nucleus	30.75	38.14
GSMUA_Achr4P32040_001	Banana	nucleus	33.07	37.54
VIT_10s0042g00940.t01	Wine grape	cytosol	28.17	37.2
PGSC0003DMT400054486	Potato	nucleus	12.14	36.43
TraesCS4A01G294700.2	Wheat	nucleus	27.39	32.12
HORVU4Hr1G002970.1	Barley	nucleus	27.39	31.83
TraesCS4B01G019200.1	Wheat	nucleus	26.36	30.82
TraesCS4D01G017200.2	Wheat	nucleus	25.84	30.3
EER93695	Sorghum	nucleus	26.87	28.89
Zm00001d013588_P001	Maize	nucleus	26.87	28.89
Os03t0666300-00	Rice	nucleus	21.96	21.74
Bra005486.1-P	Field mustard	nucleus	16.28	19.81
Bra021860.1-P	Field mustard	nucleus	14.99	18.12

Protein Annotations

EnsemblPlants:Bra023175.1	EnsemblPlants:Bra023175.1-P	EnsemblPlantsGene:Bra023175	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492
PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI00025423FC	UniProt:M4E324
MapMan:35.2	:	:	:	:	:

Description

AT1G31310 (E=3e-061) | hydroxyproline-rich glycoprotein family protein

Coordinates

chrA09:+:20999591..21001116

Molecular Weight (calculated)

42810.2 Da

IEP (calculated)

9.084

GRAVY (calculated)

-0.837

Length

387 amino acids

Sequence
(BLAST)

001: MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV
101: REYERRRVES SFAAESSSSA AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS GNGSGGGLQI QKMIQQQQEQ
201: GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRRTI PTTTAGPSGA GRGNAETEEG
301: ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE AINKLASSIF AFASSSHHNN QHQGGPS

Best Arabidopsis Sequence Match ( AT1G31310.1 )
(BLAST)

001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.