Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02375 | Canola | nucleus | 60.31 | 63.46 |
| Bra014906.1-P | Field mustard | nucleus | 61.36 | 60.88 |
| CDX77554 | Canola | nucleus | 61.36 | 60.88 |
| CDY49546 | Canola | nucleus | 57.18 | 59.19 |
| CDX98246 | Canola | nucleus | 56.66 | 58.81 |
| Bra023175.1-P | Field mustard | nucleus | 58.49 | 57.88 |
| AT2G35640.1 | Thale cress | nucleus | 43.08 | 48.53 |
| Solyc02g030460.2.1 | Tomato | nucleus | 39.69 | 44.97 |
| PGSC0003DMT400033627 | Potato | nucleus | 38.9 | 44.08 |
| Solyc02g069390.1.1 | Tomato | nucleus | 33.94 | 42.48 |
| Zm00001d034953_P001 | Maize | nucleus | 20.63 | 38.73 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 29.5 | 38.57 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 30.81 | 37.82 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 32.9 | 36.95 |
| PGSC0003DMT400054486 | Potato | nucleus | 11.49 | 34.11 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 26.89 | 30.93 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 26.63 | 30.91 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 26.63 | 30.91 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 26.37 | 30.51 |
| EER93695 | Sorghum | nucleus | 28.2 | 30.0 |
| Zm00001d013588_P001 | Maize | nucleus | 27.94 | 29.72 |
| Os03t0666300-00 | Rice | nucleus | 21.67 | 21.23 |
| AT2G33550.1 | Thale cress | cytosol | 16.19 | 19.75 |
Protein Annotations
| MapMan:35.2 | EntrezGene:840019 | ProteinID:AEE31339.1 | ArrayExpress:AT1G31310 | EnsemblPlantsGene:AT1G31310 | RefSeq:AT1G31310 |
| TAIR:AT1G31310 | RefSeq:AT1G31310-TAIR-G | EnsemblPlants:AT1G31310.1 | TAIR:AT1G31310.1 | Unigene:At.40372 | Unigene:At.70648 |
| UniProt:F4I9C1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_174416.2 |
| PFAM:PF13837 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50090 | PANTHER:PTHR33492 |
| PANTHER:PTHR33492:SF2 | UniParc:UPI000034F42A | SEG:seg | : | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
Coordinates
chr1:-:11198353..11200141
Molecular Weight (calculated)
42591.4 Da
IEP (calculated)
9.499
GRAVY (calculated)
-0.760
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.