CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013588_P001	Maize	nucleus	68.33	68.33
HORVU4Hr1G002970.1	Barley	nucleus	51.11	55.26
TraesCS4A01G294700.2	Wheat	nucleus	50.56	55.15
TraesCS4D01G017200.2	Wheat	nucleus	50.28	54.85
TraesCS4B01G019200.1	Wheat	nucleus	49.72	54.08
GSMUA_Achr5P02140_001	Banana	nucleus	30.28	34.94
Solyc02g069390.1.1	Tomato	nucleus	29.44	34.64
GSMUA_Achr4P32040_001	Banana	nucleus	32.5	34.31
Os03t0666300-00	Rice	nucleus	33.61	30.95
PGSC0003DMT400033627	Potato	nucleus	28.89	30.77
VIT_10s0042g00940.t01	Wine grape	cytosol	24.72	30.38
Solyc02g030460.2.1	Tomato	nucleus	28.06	29.88
CDY02375	Canola	nucleus	30.0	29.67
AT2G35640.1	Thale cress	nucleus	27.22	28.82
CDX98246	Canola	nucleus	29.44	28.73
CDY49546	Canola	nucleus	29.44	28.65
KXG27398	Sorghum	plastid	30.56	28.42
AT1G31310.1	Thale cress	nucleus	30.0	28.2
CDX77554	Canola	nucleus	30.0	27.98
Bra014906.1-P	Field mustard	nucleus	30.0	27.98
Bra023175.1-P	Field mustard	nucleus	28.89	26.87
PGSC0003DMT400054486	Potato	nucleus	8.89	24.81
OQU88149	Sorghum	nucleus	16.39	19.67
KXG30289	Sorghum	plastid	17.78	18.34
KXG26157	Sorghum	nucleus	16.94	16.94

Protein Annotations

MapMan:35.2	EntrezGene:8057183	UniProt:C5WQB7	EnsemblPlants:EER93695	ProteinID:EER93695	ProteinID:EER93695.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6	EnsemblPlantsGene:SORBI_3001G143400
SUPFAM:SSF46689	UniParc:UPI0001A82A8B	RefSeq:XP_002466697.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:11499447..11504092

Molecular Weight (calculated)

39488.1 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.826

Length

360 amino acids

Sequence
(BLAST)

001: MDDTIGGNRG LLGQARDDEQ ARNVVVVGAG ALTVARDYQR GNWTLPETML LIEAKRKVHE ERHPGDQGLA RWRWVEDYCW RAGCRRSQNQ CNDRWDNLMR
101: DYKKVRAYEL SGAGAGAGGR APSYWVMGRV ERKERGLPSN LLREIYDAMG EVIERRMSMG CAGSSGGPGA AFTAAASSSS LLDVPMQASP LAQVLPRPLL
201: PLEQETHGHS SPESPEKKRR RPSLDELRPG SSTPLAPGTH GHRQEQGRHR EEEDEEEDDE SSEAEYSDGD DDYNVLSGAI GRCAAILSEA LESREAAEER
301: RHREVMAVEE RRGRARQARR EAGEQCVAGL AAAVNQLAGS MLALAAAKHK DKGGGPAARK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.