Factsheet for GSMUA_Achr5P02140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32040_001	Banana	nucleus	57.37	52.49
Solyc02g069390.1.1	Tomato	nucleus	38.78	39.54
Zm00001d034953_P001	Maize	nucleus	24.04	36.76
PGSC0003DMT400033627	Potato	nucleus	37.18	34.32
CDY49546	Canola	nucleus	40.06	33.78
CDY02375	Canola	nucleus	39.1	33.52
CDX98246	Canola	nucleus	39.1	33.06
TraesCS4A01G294700.2	Wheat	nucleus	34.94	33.03
AT2G35640.1	Thale cress	nucleus	35.9	32.94
Solyc02g030460.2.1	Tomato	nucleus	35.26	32.54
TraesCS4D01G017200.2	Wheat	nucleus	34.29	32.42
VIT_10s0042g00940.t01	Wine grape	cytosol	30.13	32.08
TraesCS4B01G019200.1	Wheat	nucleus	33.97	32.02
Bra014906.1-P	Field mustard	nucleus	39.1	31.61
CDX77554	Canola	nucleus	39.1	31.61
HORVU4Hr1G002970.1	Barley	nucleus	33.65	31.53
AT1G31310.1	Thale cress	nucleus	37.82	30.81
Bra023175.1-P	Field mustard	nucleus	38.14	30.75
EER93695	Sorghum	nucleus	34.94	30.28
PGSC0003DMT400054486	Potato	nucleus	12.18	29.46
Zm00001d013588_P001	Maize	nucleus	33.33	28.89
GSMUA_AchrUn_...	Banana	nucleus, plastid	34.29	25.06
Os03t0666300-00	Rice	nucleus	27.88	22.25
GSMUA_Achr8P00510_001	Banana	nucleus	17.31	16.88
GSMUA_Achr10P...	Banana	nucleus	17.95	16.47
GSMUA_Achr6P16420_001	Banana	golgi, nucleus, plastid	6.41	8.97

Protein Annotations

EnsemblPlants:GSMUA_Achr5P02140_001	EnsemblPlants:GSMUA_Achr5T02140_001	EnsemblPlantsGene:GSMUA_Achr5G02140_001	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492
PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI0002954D80	UniProt:M0SUZ3
MapMan:35.2	:	:	:	:	:

Description

transcription factor, putative [Source:GMGC_GENE;Acc:GSMUA_Achr5G02140_001]

Coordinates

chr5:-:1367642..1368696

Molecular Weight (calculated)

35292.0 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.748

Length

312 amino acids

Sequence
(BLAST)

001: MEKNVFVVVG RGDKSREYRK GNWTLDETMV LIQAKKMDCE RREQRLKELP RGSSGRPQEM RWKWVEDRCW GRGCYRSQNQ CNDRWDNLMR DYNKVRAYET
101: SSSVGGNPDL SYWNLEKNDR KERNLPSNVL PEVYEALTEV VQRKRSGAAS APPGRPMEEK RRRGPVCSSL SSAANAFSNL PAWSYCDLSS FTLLLVCILA
201: CCDSSDSEDS QHPISPQRKR KRGEGSSSNT LELSSAIMKC ASIMAEALQA GEKQEEVRHK DLISIERRKA KLEESKSVMG LQSMDGLAAA INMLASSILG
301: LVTGRVQKLQ NK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.