CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49546	Canola	nucleus	78.57	77.3
Bra023175.1-P	Field mustard	nucleus	80.22	75.45
CDX98246	Canola	nucleus	70.88	69.92
CDX77554	Canola	nucleus	70.05	66.06
AT1G31310.1	Thale cress	nucleus	63.46	60.31
Solyc02g030460.2.1	Tomato	nucleus	41.48	44.67
PGSC0003DMT400033627	Potato	nucleus	40.11	43.2
Solyc02g069390.1.1	Tomato	nucleus	35.99	42.81
GSMUA_Achr5P02140_001	Banana	nucleus	33.52	39.1
VIT_10s0042g00940.t01	Wine grape	cytosol	30.22	37.54
Zm00001d034953_P001	Maize	nucleus	20.88	37.25
GSMUA_Achr4P32040_001	Banana	nucleus	34.07	36.36
PGSC0003DMT400054486	Potato	nucleus	12.64	35.66
TraesCS4A01G294700.2	Wheat	nucleus	29.4	32.42
HORVU4Hr1G002970.1	Barley	nucleus	28.85	31.53
TraesCS4D01G017200.2	Wheat	nucleus	28.02	30.91
TraesCS4B01G019200.1	Wheat	nucleus	27.75	30.51
EER93695	Sorghum	nucleus	29.67	30.0
Zm00001d013588_P001	Maize	nucleus	27.47	27.78
Os03t0666300-00	Rice	nucleus	23.63	21.99
CDX85279	Canola	cytosol	13.74	20.66
CDY27959	Canola	cytosol	17.03	19.56
CDY17185	Canola	cytosol	16.76	19.18
CDY37710	Canola	cytosol	16.76	19.12
CDY23727	Canola	cytosol	15.93	18.53

Protein Annotations

EnsemblPlants:CDY02375	EnsemblPlantsGene:GSBRNA2T00113874001	GO:A0A078EJW8	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR33492
PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY02375	ProteinID:CDY02375.1	SEG:seg
UniParc:UPI0004EF40DF	MapMan:35.2	:	:	:	:

Description

BnaA09g25270D

Coordinates

chrLK031933:-:1058403..1059930

Molecular Weight (calculated)

40398.4 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.829

Length

364 amino acids

Sequence
(BLAST)

001: MADKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEH GNKPAELRWK WIEDYCWRKG CMRSQNQCND KWDNLMRDYK KVREYERRRV
101: ESSFAAESSS SAAAETGTYW TMEKSERKER NLPSNMSPQT YQALFDVVES KTHPSSTAAT NVTAAVAAAA ASGNGSGGLG FVQKHQMIQP HVLLPLHPPP
201: PPPLPPSQAL QPRPLLLSPP PPPSFHAQPI LPTKDTSSDS DTSEHPDTSP AKRRRTIPTT TDGPSGATRG NSETEEGETV VAAAFSRSAS VIANAIRESE
301: ERQDRRHKEV MSLEERRLMI EESNVQINRE GMNGLVEAIN KLASSIFAFA SSSHHNNQHQ GGPS

Best Arabidopsis Sequence Match ( AT1G31310.1 )
(BLAST)

001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.