Factsheet for Zm00001d013588_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93695	Sorghum	nucleus	68.33	68.33
Zm00001d034953_P001	Maize	nucleus	32.78	57.84
TraesCS4A01G294700.2	Wheat	nucleus	50.83	55.45
HORVU4Hr1G002970.1	Barley	nucleus	50.0	54.05
TraesCS4D01G017200.2	Wheat	nucleus	49.44	53.94
TraesCS4B01G019200.1	Wheat	nucleus	48.61	52.87
Solyc02g069390.1.1	Tomato	nucleus	29.17	34.31
GSMUA_Achr5P02140_001	Banana	nucleus	28.89	33.33
Zm00001d001894_P001	Maize	mitochondrion	34.44	32.55
GSMUA_Achr4P32040_001	Banana	nucleus	30.56	32.26
PGSC0003DMT400033627	Potato	nucleus	29.44	31.36
Solyc02g030460.2.1	Tomato	nucleus	29.17	31.07
AT2G35640.1	Thale cress	nucleus	28.06	29.71
CDX98246	Canola	nucleus	30.28	29.54
AT1G31310.1	Thale cress	nucleus	29.72	27.94
CDY02375	Canola	nucleus	27.78	27.47
Bra014906.1-P	Field mustard	nucleus	29.44	27.46
CDX77554	Canola	nucleus	29.44	27.46
Bra023175.1-P	Field mustard	nucleus	28.89	26.87
CDY49546	Canola	nucleus	27.5	26.76
VIT_10s0042g00940.t01	Wine grape	cytosol	21.67	26.62
PGSC0003DMT400054486	Potato	nucleus	9.17	25.58
Zm00001d042271_P001	Maize	nucleus, plastid	16.11	20.94
Zm00001d050583_P001	Maize	plastid	19.72	19.24
Zm00001d016604_P001	Maize	plastid	18.89	18.58
Zm00001d025275_P001	Maize	mitochondrion, nucleus	17.22	18.56
Zm00001d003889_P001	Maize	nucleus	17.22	17.77

Protein Annotations

EnsemblPlants:Zm00001d013588_P001	EnsemblPlants:Zm00001d013588_T001	EnsemblPlantsGene:Zm00001d013588	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492
PANTHER:PTHR33492:SF6	PFAM:PF13837	PFscan:PS50090	ProteinID:AQK63899.1	SEG:seg	SUPFAM:SSF46689
UniParc:UPI0008447D63	UniProt:A0A1D6GKP0	MapMan:35.2	:	:	:

Description

hydroxyproline-rich glycoprotein family protein

Coordinates

chr5:-:14944805..14946459

Molecular Weight (calculated)

39269.8 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.882

Length

360 amino acids

Sequence
(BLAST)

001: MDDTMGGSAT RGLLGHQARD DEQAARNVVV GAGALTVARD YRRGNWTLPE TMLLIEAKRK VHEERHPGDQ GLARWRWVED YCWRAGCRRS QNQCNDRWDN
101: LMRDYKKVRA YELSGTGAGA GGRAPSYWAM GREERKERGL PTNLLREIYD AMGEVIKRRM TMGCCGSGGG GLTAASSSSL LDVPMQASPL AQVLPRPLPP
201: EQGTHGHSSP ESPERKRRRP SLDELRPGSG TPSAPAGTHA CRQGRQGRHG EEEEEDDGDE SSAESETEYS DDDYNVLGGA IGRCAAILSE ALESREAAEE
301: RRHREVMAAE ERRGRARQER REAGEQCVAG LAAAVNQLAG SMLALAAAKH EDKGGPAAPK

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.