Factsheet for Zm00001d001894_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27398	Sorghum	plastid	67.98	66.93
Os04t0670900-00	Rice	nucleus	64.83	63.33
TraesCS2B01G579700.1	Wheat	nucleus, plastid	60.37	55.83
TraesCS2D01G549900.1	Wheat	nucleus, plastid	59.84	55.75
TraesCS2A01G549300.1	Wheat	nucleus, plastid	56.96	53.32
KRH34785	Soybean	cytosol	9.71	50.0
KRG91999	Soybean	nucleus	40.16	46.22
GSMUA_AchrUn_...	Banana	nucleus, plastid	48.82	43.56
Zm00001d034953_P001	Maize	nucleus	22.05	41.18
Zm00001d013588_P001	Maize	nucleus	32.55	34.44
Zm00001d042271_P001	Maize	nucleus, plastid	17.59	24.19
Zm00001d050583_P001	Maize	plastid	21.78	22.49
Zm00001d025275_P001	Maize	mitochondrion, nucleus	18.37	20.96
Zm00001d016604_P001	Maize	plastid	19.68	20.49
Zm00001d003889_P001	Maize	nucleus	17.59	19.2

Protein Annotations

EMBL:BT066872	EnsemblPlants:Zm00001d001894_P001	EnsemblPlants:Zm00001d001894_T001	EnsemblPlantsGene:Zm00001d001894	EntrezGene:100383309	InterPro:IPR017877
InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR33492	PANTHER:PTHR33492:SF2	PFAM:PF13837	PFscan:PS50090
ProteinID:ONM12324.1	SEG:seg	UniParc:UPI000195CA6E	UniProt:C0PF03	MapMan:35.2	:

Description

hydroxyproline-rich glycoprotein family protein

Coordinates

chr2:+:2491277..2493876

Molecular Weight (calculated)

40873.0 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.640

Length

381 amino acids

Sequence
(BLAST)

001: MSDNTVAKAA AATMTPAAAS DPSPSSSSGV GASPLALLRP HAHGHMTPPS PALAAPPPSP ASAPRDYRKG NWTLQETLVL ITAKRLDDDR RAGGAHAHAH
101: ALAGSPTTPR SAEQRWKWVE NYCWNHGCLR SQNQCNDKWD NLLRDYKKVR DYESRAAAAA PAAAPATRAL PSYWAMERHE RKDRNLPTNL APEVFDALTD
201: VLSRRAARRG GAAITAAPPP PQLALPAPPP PPPLPPPSPP KPPIVQPRAP PPPLPLPAAV PPPATSVSAE ELTGSSESGE DDDGSDAVAE PEPKRRRLNR
301: LGSSVVRSAT VLARTLVACE EKRERRHREV LELEERRLRL EEERTEVRRQ GFAGLVSAVN SLSSAIHALV SDHRSGDSAS R

Best Arabidopsis Sequence Match ( AT2G35640.1 )
(BLAST)

001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.