Factsheet for Zm00001d034953_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013588_P001	Maize	nucleus	57.84	32.78
Os03t0666300-00	Rice	nucleus	50.0	26.09
VIT_10s0042g00940.t01	Wine grape	cytosol	36.76	25.6
Solyc02g069390.1.1	Tomato	nucleus	37.25	24.84
GSMUA_Achr5P02140_001	Banana	nucleus	36.76	24.04
GSMUA_Achr4P32040_001	Banana	nucleus	39.71	23.75
Zm00001d001894_P001	Maize	mitochondrion	41.18	22.05
PGSC0003DMT400033627	Potato	nucleus	35.78	21.6
Solyc02g030460.2.1	Tomato	nucleus	35.29	21.3
CDY02375	Canola	nucleus	37.25	20.88
CDX98246	Canola	nucleus	37.75	20.87
AT1G31310.1	Thale cress	nucleus	38.73	20.63
Bra023175.1-P	Field mustard	nucleus	38.73	20.41
CDY49546	Canola	nucleus	36.76	20.27
AT2G35640.1	Thale cress	nucleus	33.33	20.0
CDX77554	Canola	nucleus	37.75	19.95
Bra014906.1-P	Field mustard	nucleus	37.75	19.95
Zm00001d042271_P001	Maize	nucleus, plastid	26.47	19.49
Zm00001d025275_P001	Maize	mitochondrion, nucleus	25.0	15.27
Zm00001d003889_P001	Maize	nucleus	25.98	15.19
Zm00001d016604_P001	Maize	plastid	26.96	15.03
Zm00001d050583_P001	Maize	plastid	26.47	14.63
PGSC0003DMT400054486	Potato	nucleus	5.39	8.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	UniProt:A0A1D6LCZ8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	ProteinID:ONM11902.1	PFAM:PF13837
PFscan:PS50090	PANTHER:PTHR33492	PANTHER:PTHR33492:SF6	SUPFAM:SSF46689	UniParc:UPI0008437E0C	EnsemblPlantsGene:Zm00001d034953
EnsemblPlants:Zm00001d034953_P001	EnsemblPlants:Zm00001d034953_T001	SEG:seg	:	:	:

Description

hydroxyproline-rich glycoprotein family protein

Coordinates

chr1:-:306556126..306556740

Molecular Weight (calculated)

22860.4 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.412

Length

204 amino acids

Sequence
(BLAST)

001: MDDTRGLLIG QARDDEQARN VMVVGSTSAL AVVREYRRGN WTLPETMMLI EAKQKVHEER HPGDQGLARW RWVEDYCWRA GCRRSQNQCN DRWDNLMRDY
101: KKVRAYELSA AGANAAAAGR PLSYWAMGRA ERKERGLPNN LLREIYDAIA EVIGRRTSMG CAAGAAFTAT TASLLDVPMQ ASPLAQVLPR PLLALGTRSF
201: VIHV

Best Arabidopsis Sequence Match ( AT1G31310.1 )
(BLAST)

001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN

Arabidopsis Description

Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.