Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034953_P001 | Maize | nucleus | 25.6 | 36.76 |
| Solyc02g069390.1.1 | Tomato | nucleus | 36.18 | 34.64 |
| AT2G35640.1 | Thale cress | nucleus | 38.91 | 33.53 |
| PGSC0003DMT400033627 | Potato | nucleus | 36.52 | 31.66 |
| Solyc02g030460.2.1 | Tomato | nucleus | 35.84 | 31.07 |
| CDX98246 | Canola | nucleus | 38.57 | 30.62 |
| CDY02375 | Canola | nucleus | 37.54 | 30.22 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 32.08 | 30.13 |
| AT1G31310.1 | Thale cress | nucleus | 38.57 | 29.5 |
| CDY49546 | Canola | nucleus | 36.52 | 28.92 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 33.11 | 28.45 |
| Bra023175.1-P | Field mustard | nucleus | 37.2 | 28.17 |
| CDX77554 | Canola | nucleus | 36.86 | 27.98 |
| Bra014906.1-P | Field mustard | nucleus | 36.86 | 27.98 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 28.67 | 25.23 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 28.33 | 25.15 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 27.99 | 24.85 |
| EER93695 | Sorghum | nucleus | 30.38 | 24.72 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 27.65 | 24.47 |
| Zm00001d013588_P001 | Maize | nucleus | 26.62 | 21.67 |
| Os03t0666300-00 | Rice | nucleus | 27.99 | 20.97 |
| VIT_01s0150g00050.t01 | Wine grape | nucleus | 18.77 | 16.18 |
| VIT_17s0000g00270.t01 | Wine grape | nucleus | 17.41 | 15.04 |
| PGSC0003DMT400054486 | Potato | nucleus | 3.75 | 8.53 |
Protein Annotations
| ArrayExpress:VIT_10s0042g00940 | EMBL:FN595766 | EnsemblPlants:VIT_10s0042g00940.t01 | EnsemblPlantsGene:VIT_10s0042g00940 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| PANTHER:PTHR33492 | PANTHER:PTHR33492:SF2 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CCB52120 | ProteinID:CCB52120.1 |
| RefSeq:XP_002272167 | RefSeq:XP_002272167.2 | SEG:seg | UniParc:UPI00021087D9 | UniProt:F6HIS4 | MapMan:35.2 |
Description
No Description!
Coordinates
chr10:-:14351991..14353443
Molecular Weight (calculated)
32715.2 Da
IEP (calculated)
9.045
GRAVY (calculated)
-0.668
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQGGSSAV TVMRDYRKGN WTVNETMILI EAKKMDDQRR MKRSGENEGR SKPAELRWKW VEDYCWRKGC LRSQNQCNDK WDNLMRDYKK VRDYERRLLS
101: ERGDSGDHDG GPSSSSSYWM IDKNERKEKN LPSNMLRQIY EGLVEVVERK GVGTTSSAAA AAHQRVMSGG GGGLGLGSIP NIGYVVDRIE PPLPPLLQHH
201: NPSPVSVAAL PPPPPLPPPP SAPQPPQQPQ QPHIAYPQPL PSLAQILIQV SIQTHQQSGG EEVVEKAQVV VLLLQVEAPQ LKWVLQFQKV LPL
101: ERGDSGDHDG GPSSSSSYWM IDKNERKEKN LPSNMLRQIY EGLVEVVERK GVGTTSSAAA AAHQRVMSGG GGGLGLGSIP NIGYVVDRIE PPLPPLLQHH
201: NPSPVSVAAL PPPPPLPPPP SAPQPPQQPQ QPHIAYPQPL PSLAQILIQV SIQTHQQSGG EEVVEKAQVV VLLLQVEAPQ LKWVLQFQKV LPL
001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.